Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	FAM107B	Gene	0	221.75	430.82	114.56	121.22	70.50	206.40	25.59
2	181796	Transcript	0	0.00	0.00	0.02	0.00	0.00	0.07	0.00
3	378467	Transcript	0	2.76	17.68	0.00	5.40	0.00	3.85	0.00
4	378465	Transcript	0	0	0	0	0	0	0	0
5	378457	Transcript	0	11.57	33.35	3.32	3.28	1.70	9.24	1.04
6	378461	Transcript	0	0.07	0.11	0.03	0.06	0.00	0.22	0.00
7	378462	Transcript	0	7.67	5.27	7.43	2.69	0.82	3.05	0.21
8	378458	Transcript	0	19.13	8.63	9.84	3.17	0.40	3.57	0.37
9	378470	Transcript	0	5.24	4.99	2.94	2.07	0.52	1.36	0.30
10	ER1a	ExonRegion	0	0.00	0.00	0.08	0.00	0.00	0.29	0.00
11	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E2a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER3a	ExonRegion	0	0.00	0.36	0.00	0.00	0.00	0.00	0.00
15	E3_Ac	KnownBoundary	0	0.00	1.16	0.00	0.00	0.00	0.00	0.00
16	ER3b	ExonRegion	0	0.00	1.21	0.00	0.00	0.00	0.00	0.00
17	ER3c	ExonRegion	0	4.10	27.38	1.47	7.76	1.15	13.70	0.06
18	E3a_E7a	KnownJunction	0	5.52	34.99	0.00	10.81	0.00	7.69	0.00
19	E3a_E9a	KnownJunction	0	13.35	87.17	6.70	28.39	2.97	39.05	0.56
20	I3_SR2	SilentIntronRegion	1	41.92	19.49	40.69	12.16	1.43	12.40	0.23
21	I3_AR2	ActiveIntronRegion	1	51.96	19.12	44.97	8.16	3.91	12.66	1.19
22	I3_SR4	SilentIntronRegion	1	47.58	17.98	22.58	10.00	1.67	13.01	0.36
23	I3_AR4	ActiveIntronRegion	1	50.81	15.32	18.72	11.05	1.92	10.07	0.28
24	I3_AR5	ActiveIntronRegion	1	74.20	19.84	25.44	6.23	5.22	20.43	0.00
25	I3_SR5	SilentIntronRegion	1	48.39	18.68	20.32	9.46	1.49	12.33	0.39
26	ER4a	ExonRegion	0	0.14	0.22	0.06	0.11	0.00	0.44	0.00
27	E4a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	I4_SR1	SilentIntronRegion	1	52.98	27.05	26.06	17.82	2.07	14.22	0.00
29	I4_AR1	ActiveIntronRegion	1	61.17	26.08	32.62	11.30	2.53	14.41	0.00
30	I4_SR2	SilentIntronRegion	1	52.82	17.13	30.15	8.32	1.59	10.89	0.57
31	I4_AR9	ActiveIntronRegion	0	44.38	28.65	20.04	8.31	0.81	3.68	2.02
32	I4_AR10	ActiveIntronRegion	0	43.30	30.21	23.14	11.98	1.15	1.61	1.65
33	I4_AR13	ActiveIntronRegion	1	75.54	37.71	32.89	14.07	2.09	12.06	1.31
34	I4_AR14	ActiveIntronRegion	1	48.34	12.28	22.21	5.08	1.09	3.64	0.36
35	ER5a	ExonRegion	0	15.33	10.54	14.86	5.38	1.64	6.09	0.41
36	E5a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER6a	ExonRegion	0	37.65	17.26	19.69	6.34	0.79	7.14	0.74
38	E6_Da	NovelBoundary	1	58.33	19.39	36.64	12.68	0.00	6.22	0.82
39	E6a_E7a	KnownJunction	0	0.62	0.00	0.00	0.00	0.00	0.00	0.00
40	I6	Intron	1	55.18	25.77	17.13	9.54	1.08	11.39	0.40
41	I6_SR1	SilentIntronRegion	0	45.66	16.70	19.48	6.96	1.01	6.90	0.51
42	I6_AR1	ActiveIntronRegion	1	64.41	50.81	40.96	11.74	1.60	15.49	0.98
43	I6_AR2	ActiveIntronRegion	1	93.49	60.49	34.13	22.91	1.74	35.63	0.66
44	I6_SR3	SilentIntronRegion	1	114.71	43.07	27.35	23.58	0.59	43.85	0.98
45	I6_AR3	ActiveIntronRegion	1	116.66	55.70	29.10	25.90	1.70	33.73	0.52
46	I6_AR5	ActiveIntronRegion	0	51.07	20.97	15.03	7.46	1.12	5.48	0.93
47	I6_SR5	SilentIntronRegion	1	51.89	21.47	17.05	7.62	1.09	7.60	0.21
48	I6_AR6	ActiveIntronRegion	1	67.10	22.33	11.38	8.38	2.01	4.65	0.24
49	I6_SR9	SilentIntronRegion	1	80.15	43.65	16.03	9.35	0.89	12.06	0.36
50	I6_AR10	ActiveIntronRegion	1	54.63	40.85	14.62	8.24	0.58	12.09	0.26
51	I6_SR11	SilentIntronRegion	1	67.73	23.25	20.75	9.12	1.54	11.91	0.70
52	ER7a	ExonRegion	0	35.08	115.72	16.32	33.10	2.71	32.21	3.68
53	E7a_E9a	KnownJunction	0	54.63	182.27	28.35	42.13	4.13	52.74	7.08
54	ER8a	ExonRegion	0	12.89	4.84	4.75	6.22	0.20	2.87	0.22
55	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	I8_AR10	ActiveIntronRegion	1	46.01	19.29	19.73	13.40	3.24	11.03	0.00
57	I8_AR11	ActiveIntronRegion	1	48.48	17.72	19.28	11.17	1.72	9.65	0.00
58	I8_AR12	ActiveIntronRegion	1	52.14	12.01	15.91	10.85	0.36	5.13	0.00
59	I8_AR13	ActiveIntronRegion	1	52.14	11.11	11.13	8.02	0.00	1.93	0.00
60	ER9a	ExonRegion	0	229.15	832.90	130.67	224.97	38.70	376.23	28.79
61	E9a_E10a	KnownJunction	1	9.55	35.83	1.19	2.47	3.14	10.24	0.64
62	E9a_E11a	KnownJunction	0	291.29	978.35	198.01	260.56	66.21	474.81	45.16
63	ER10a	ExonRegion	0	13.59	30.87	5.45	4.10	0.26	8.25	1.43
64	ER11a	ExonRegion	0	393.27	997.30	203.67	255.83	89.91	456.24	46.18
65	E11a_E12a	KnownJunction	0	405.10	1113.44	194.14	257.09	72.59	428.37	54.37
66	ER12a	ExonRegion	0	392.29	908.08	180.90	230.95	96.04	364.39	46.95
67	E12_Da	KnownBoundary	0	196.47	437.63	105.72	108.39	55.47	206.63	27.30
68	E12_Db	KnownBoundary	0	88.49	240.96	55.67	59.06	42.28	84.96	8.81
69	ER12b	ExonRegion	0	283.47	668.64	156.93	166.12	71.54	298.60	34.48
70	E12_Dc	KnownBoundary	0	228.39	554.70	132.60	139.41	86.52	217.67	29.98
71	ER12c	ExonRegion	0	274.30	690.17	165.18	165.98	84.10	272.22	35.08
72	ER12d	ExonRegion	0	492.81	745.42	251.94	214.54	112.87	352.28	41.76
73	E12_Dd	KnownBoundary	0	393.73	585.80	197.94	158.16	121.63	229.41	35.03
74	ER12e	ExonRegion	0	307.10	682.28	169.83	201.39	112.99	306.15	45.33
75	E12_De	KnownBoundary	0	332.78	526.79	167.37	187.36	123.84	281.08	41.63
76	ER12f	ExonRegion	0	312.59	450.47	149.61	123.70	120.34	268.83	30.09
77	ER12g	ExonRegion	0	2.82	10.12	4.06	0.00	1.35	1.23	0.67