Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SEC61A2	Gene	0	18.14	13.23	29.02	36.13	63.46	48.35	34.65
2	379051	Transcript	0	1.23	2.88	4.34	1.84	3.70	9.21	2.09
3	298428	Transcript	0	0	0	0	0	0	0	0
4	379041	Transcript	0	0.00	0.00	0.07	0.00	0.81	0.00	0.20
5	304267	Transcript	1	5.80	6.99	10.64	31.45	11.03	37.47	4.49
6	379033	Transcript	0	1.15	1.37	1.61	2.18	1.01	4.60	1.60
7	379020	Transcript	0	5.53	2.74	10.41	9.37	19.98	12.57	12.40
8	379017	Transcript	0	3.12	0.00	3.01	1.14	3.42	1.68	3.01
9	ER1a	ExonRegion	0	2.03	0.02	1.02	0.88	6.27	0.85	1.78
10	E1_Ab	KnownBoundary	0	1.00	0.00	0.00	0.00	1.11	0.00	0.00
11	E1_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	E1_Ad	KnownBoundary	0	3.76	0.00	3.15	1.63	3.85	1.55	4.21
13	ER1b	ExonRegion	0	8.20	1.21	7.00	2.49	22.14	2.45	5.17
14	ER1c	ExonRegion	0	8.45	1.21	8.13	2.49	22.68	2.45	6.07
15	E1_Ae	KnownBoundary	0	6.93	0.00	8.61	1.60	10.26	1.55	4.44
16	ER1d	ExonRegion	0	14.74	2.70	15.94	9.47	34.77	8.93	13.22
17	E1_Af	KnownBoundary	0	14.47	4.44	16.74	13.03	22.96	16.40	15.81
18	ER1e	ExonRegion	0	21.13	3.85	24.61	13.92	44.68	17.98	19.23
19	ER1f	ExonRegion	0	17.27	9.06	23.43	20.59	27.29	33.41	19.54
20	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	E1b_E2b	KnownJunction	0	8.73	8.64	9.86	16.50	5.03	33.63	7.70
22	ER1g	ExonRegion	0	9.99	10.93	12.87	17.46	7.29	38.01	13.15
23	ER2a	ExonRegion	0	2.31	2.73	3.22	4.36	2.02	9.19	3.20
24	ER2b	ExonRegion	0	16.94	15.67	22.14	22.80	11.42	43.20	19.68
25	E2a_E3a	KnownJunction	0	32.03	18.42	43.73	39.01	29.07	58.21	34.65
26	ER3a	ExonRegion	0	29.54	22.88	44.00	50.16	66.64	64.36	41.15
27	E3a_E4a	KnownJunction	0	16.94	22.54	30.71	50.42	83.29	66.81	38.11
28	ER4a	ExonRegion	0	20.94	23.84	34.13	48.81	70.96	70.77	37.33
29	E4a_E5a	KnownJunction	0	20.80	19.99	31.10	59.65	64.78	80.27	32.05
30	ER5a	ExonRegion	0	20.60	21.80	41.12	60.83	78.07	85.23	39.26
31	E5a_E6a	KnownJunction	0	28.81	22.59	52.34	62.12	76.79	91.04	35.43
32	ER6a	ExonRegion	0	20.85	16.27	39.39	53.89	80.57	68.04	32.38
33	E6_Da	NovelBoundary	0	15.54	2.26	12.47	4.44	7.61	1.50	7.72
34	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	E6a_E8a	KnownJunction	0	0.00	3.94	4.94	2.60	0.00	13.48	1.69
36	E6a_E9a	KnownJunction	0	5.12	0.00	15.46	7.80	73.45	7.45	17.01
37	E6a_E10a	NovelJunction	0	7.99	15.16	21.01	53.45	8.88	44.57	16.15
38	I6	Intron	0	6.27	1.66	8.50	2.05	7.08	2.35	11.57
39	I6_SR1	SilentIntronRegion	0	9.75	0.03	12.10	1.60	9.38	0.90	6.20
40	I6_SR2	SilentIntronRegion	0	6.12	1.90	11.51	1.29	6.06	1.83	4.18
41	I6_SR3	SilentIntronRegion	1	4.26	1.13	5.92	1.54	5.03	2.36	9.45
42	I6_AR2	ActiveIntronRegion	1	10.92	3.60	13.53	3.92	12.59	3.01	22.27
43	E7_Aa	NovelBoundary	0	22.18	3.21	22.19	8.72	19.04	0.00	27.77
44	ER7a	ExonRegion	0	6.25	0.00	6.02	2.28	6.85	3.37	6.01
45	E7_Da	NovelBoundary	0	20.36	3.63	15.51	7.42	11.62	6.14	19.62
46	I7	Intron	1	12.93	5.88	13.80	8.45	13.11	5.02	22.41
47	I7_AR1	ActiveIntronRegion	0	9.56	3.52	17.63	5.85	16.76	2.89	12.94
48	I7_SR1	SilentIntronRegion	1	13.29	6.13	13.43	8.73	12.76	5.24	23.39
49	E8_Aa	NovelBoundary	0	10.41	0.00	18.47	2.87	9.66	1.66	11.62
50	ER8a	ExonRegion	1	1.67	4.68	7.07	2.03	4.82	13.29	2.81
51	E8_Da	NovelBoundary	0	6.11	4.20	10.75	4.33	4.31	4.26	7.40
52	E8a_E10a	NovelJunction	1	5.37	1.42	7.67	3.25	0.00	24.17	6.66
53	I8	Intron	0	8.20	3.47	13.59	5.08	11.24	6.23	12.22
54	I8_AR1	ActiveIntronRegion	0	8.24	3.48	13.65	5.11	11.30	6.26	12.29
55	E9_Aa	NovelBoundary	1	3.27	1.63	5.32	0.00	6.99	4.42	11.11
56	ER9a	ExonRegion	0	6.53	7.33	14.97	12.45	102.68	19.19	26.00
57	E9a_E10a	KnownJunction	1	4.24	1.18	13.84	5.91	132.28	13.53	22.84
58	I9	Intron	0	7.88	2.56	9.53	3.69	7.94	2.77	12.33
59	I9_AR1	ActiveIntronRegion	0	7.90	2.56	9.55	3.70	7.95	2.78	12.36
60	E10_Aa	NovelBoundary	1	6.69	4.20	8.32	4.17	9.96	2.71	18.01
61	ER10a	ExonRegion	0	23.31	18.79	49.09	58.55	109.31	70.31	55.66
62	E10a_E11a	KnownJunction	0	34.21	20.75	51.81	57.68	110.63	68.29	65.58
63	E10a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	ER11a	ExonRegion	0	32.27	24.89	47.75	68.00	109.01	78.69	63.95
65	E11a_E12a	KnownJunction	0	24.30	27.27	32.92	63.53	98.85	52.85	54.14
66	I11_AR2	ActiveIntronRegion	0	4.24	1.62	10.89	2.49	7.20	3.49	4.50
67	I11_SR2	SilentIntronRegion	0	5.01	3.80	12.67	3.17	8.44	5.91	4.03
68	ER12a	ExonRegion	0	23.54	30.37	37.19	79.33	97.66	92.66	65.22
69	E12a_E13a	KnownJunction	0	18.79	33.00	38.46	77.94	89.56	107.55	57.73
70	ER13a	ExonRegion	0	20.64	18.03	35.77	76.11	105.56	84.21	56.97
71	E13_Da	NovelBoundary	1	1.02	5.54	13.38	2.71	6.48	1.66	13.50
72	E13a_E15a	KnownJunction	0	17.06	7.15	24.30	32.43	86.24	49.42	45.63
73	E13a_E16a	KnownJunction	0	3.86	6.44	4.91	34.68	1.18	27.34	0.00
74	I13	Intron	0	3.63	3.07	7.65	0.63	9.62	1.86	8.48
75	I13_AR1	ActiveIntronRegion	1	3.67	3.10	7.75	0.64	9.73	1.88	8.58
76	ER14a	ExonRegion	0	0.00	0.00	0.07	0.00	0.81	0.00	0.20
77	I14	Intron	1	2.08	2.03	4.91	5.48	8.47	3.96	9.25
78	I14_SR1	SilentIntronRegion	1	2.34	2.29	5.48	6.19	9.03	4.47	10.45
79	E15_Aa	NovelBoundary	1	1.03	4.73	11.05	5.77	7.54	6.19	12.80
80	ER15a	ExonRegion	0	36.49	18.60	45.00	39.31	114.00	46.83	65.94
81	E15_Da	KnownBoundary	0	46.33	12.72	74.74	28.45	57.29	40.28	63.88
82	ER15b	ExonRegion	1	39.15	6.87	60.16	31.31	71.99	67.59	60.07
83	E15_Db	KnownBoundary	1	22.90	2.55	28.30	24.98	77.80	68.23	32.12
84	ER15c	ExonRegion	0	11.05	5.49	20.82	18.73	39.96	25.15	24.79
85	E15_Dc	NovelBoundary	1	3.57	3.26	14.34	7.02	28.42	7.50	13.13
86	I15	Intron	0	22.08	10.93	40.87	12.14	138.43	7.08	34.58
87	I15_AR1	ActiveIntronRegion	0	22.12	10.94	40.94	12.16	138.66	7.09	34.64
88	Ix	Intron	0	42.87	16.11	66.13	15.16	208.43	5.24	39.19
89	Ix_AR1	ActiveIntronRegion	0	42.97	16.14	66.28	15.20	208.87	5.25	39.28
90	ER16a	ExonRegion	1	7.74	7.55	16.36	28.23	20.89	47.60	8.98