Distributions of all expression values and Top 1% of expressed Intergenic features for libraries: Mip101, Mip5FuR
Download data matrix file (Intergenic x library): IntergenicExpression_v53.txt.gz
Distribution of log2 expression values for library: Mip101 and data type: Intergenic
Distribution of all expression values for the feature type: Intergenic. Note that unlike in the individual gene pages these log2 expression values were not adjusted by adding 1 before converting to log2 scale. This results in -ve expression values if the average coverage of the feature was less than 1 before conversion to log2 scale. The 95th percentile of Silent Intergenic regions is reported to give an indication of the level of background expression noise. *If you can not see the figure below, click here
Distribution of log2 expression values for library: Mip5FuR and data type: Intergenic
Distribution of all expression values for the feature type: Intergenic. Note that unlike in the individual gene pages these log2 expression values were not adjusted by adding 1 before converting to log2 scale. This results in -ve expression values if the average coverage of the feature was less than 1 before conversion to log2 scale. The 95th percentile of Silent Intergenic regions is reported to give an indication of the level of background expression noise. *If you can not see the figure below, click here
Top 1% of expressed Intergenic features
The following table provides a ranked list of the most highly expressed Intergenic features. Each column corresponds to an expression library. Each table cell contains the Gene Name (which links to the ALEXA-Seq gene record), followed by the Feature Name (which links to the feature's coordinates in the UCSC Genome Browser and displays expression data), the log2 expression value 'Exp' for the feature, and the percent expression value '% Exp' ([feature expression/gene expression]*100). For Gene records the percent displayed here represents the percentage of all reads for the library instead. Features that are NOT supported by an EST/mRNA sequence are indicated in bold. For exon junction features the number of exons skipped by the junction is indicated as 'Sn', where n is the number of exons skipped (e.g. S0 means no exons skipped, S1 means one exon skipped, etc.).
| RANK | Mip101 (Gene | Feature | Exp | % Exp) | Mip5FuR (Gene | Feature | Exp | % Exp) |
| 1 | AF347015.1 | IG30 | 10.40 | NA% | SSU_rRNA_5 | IG1 | 11.78 | NA% |
| 2 | SSU_rRNA_5 | IG1 | 10.28 | NA% | AF347015.1 | IG30 | 10.86 | NA% |
| 3 | DSG2 | IG51 | 10.11 | NA% | NACA | IG51 | 10.01 | NA% |
| 4 | NACA | IG51 | 9.79 | NA% | DSG2 | IG51 | 9.98 | NA% |
| 5 | AC100778.5 SNORD58 | IG27 | 9.43 | NA% | SSU_rRNA_5 | IG4 | 9.46 | NA% |
| 6 | SNORD47 snosnR60_Z15 | IG46 | 8.68 | NA% | AC100778.5 SNORD58 | IG27 | 9.15 | NA% |
| 7 | NOL5A IDH3B | IG46 | 8.64 | NA% | SNORD47 snosnR60_Z15 | IG46 | 8.94 | NA% |
| 8 | SSU_rRNA_5 | IG4 | 8.49 | NA% | NOL5A IDH3B | IG46 | 8.81 | NA% |
| 9 | EXOSC9 CCNA2 | IG29 | 8.48 | NA% | SNORD60 TRAF7 | IG45 | 8.53 | NA% |
| 10 | hsa-mir-141 PHB2 | IG42 | 8.08 | NA% | SNORND104 SNORA76 | IG14 | 8.46 | NA% |
| 11 | FAM36A RP11-11N7.2 | IG2 | 8.03 | NA% | RPL23A TLCD1 | IG41 | 8.38 | NA% |
| 12 | RLBP1L1 ASPH | IG21 | 7.97 | NA% | RLBP1L1 ASPH | IG21 | 8.28 | NA% |
| 13 | PGAM5 5S_rRNA | IG29 | 7.84 | NA% | hsa-mir-141 PHB2 | IG42 | 8.22 | NA% |
| 14 | SNORD81 SNORD47 | IG45 | 7.83 | NA% | FAM36A RP11-11N7.2 | IG2 | 8.14 | NA% |
| 15 | SNORD44 SNORD77 | IG50 | 7.82 | NA% | EXOSC9 CCNA2 | IG29 | 8.01 | NA% |
| 16 | SF3A2 AMH | IG36 | 7.73 | NA% | SF3A2 AMH | IG36 | 7.92 | NA% |
| 17 | RPL23A TLCD1 | IG41 | 7.73 | NA% | NCBP2 PIGZ | IG23 | 7.92 | NA% |
| 18 | LGALS8 HEATR1 | IG35 | 7.70 | NA% | SNORD81 SNORD47 | IG45 | 7.91 | NA% |
| 19 | SAMD4B PAF1 | IG36 | 7.68 | NA% | RAB14 | IG51 | 7.91 | NA% |
| 20 | RPS25 TRAPPC4 | IG23 | 7.65 | NA% | USP14 THOC1 | IG4 | 7.91 | NA% |
| 21 | GAL3ST2 NEU4 | IG16 | 7.65 | NA% | PGAM5 5S_rRNA | IG29 | 7.89 | NA% |
| 22 | SNORD79 SNORD78 | IG48 | 7.62 | NA% | SAMD4B PAF1 | IG36 | 7.87 | NA% |
| 23 | snosnR60_Z15 SNORD79 | IG47 | 7.59 | NA% | RAB26 SNORD60 | IG44 | 7.84 | NA% |
| 24 | ULK3 SCAMP2 | IG48 | 7.57 | NA% | SNORD44 SNORD77 | IG50 | 7.83 | NA% |
| 25 | USP14 THOC1 | IG4 | 7.55 | NA% | PCBP2 MAP3K12 | IG6 | 7.78 | NA% |
| 26 | RPL36 LONP1 | IG13 | 7.54 | NA% | MCM4 AC021236.10 | IG4 | 7.74 | NA% |
| 27 | PCYOX1 SNRPG | IG3 | 7.49 | NA% | AC032027.7 IMPAD1 | IG50 | 7.72 | NA% |
| 28 | NFATC3 RBM35B | IG20 | 7.48 | NA% | SNORD28 SNORD27 | IG30 | 7.71 | NA% |
| 29 | snoR38 ST6GALNAC2 | IG6 | 7.43 | NA% | RPS25 TRAPPC4 | IG23 | 7.67 | NA% |
| 30 | AC002558.1 CDC27 | IG11 | 7.39 | NA% | NFATC3 RBM35B | IG20 | 7.66 | NA% |
| 31 | MCM4 AC021236.10 | IG4 | 7.38 | NA% | SNORD29 SNORD28 | IG29 | 7.64 | NA% |
| 32 | FAM38A AC138028.1 | IG6 | 7.38 | NA% | snosnR60_Z15 SNORD79 | IG47 | 7.62 | NA% |
| 33 | AC012360.7 TGFBRAP1 | IG16 | 7.35 | NA% | GAL3ST2 NEU4 | IG16 | 7.58 | NA% |
| 34 | MPHOSPH8 AL354808.24 | IG48 | 7.34 | NA% | SNORD30 SNORD29 | IG28 | 7.56 | NA% |
| 35 | AC032027.7 IMPAD1 | IG50 | 7.34 | NA% | MORC2 AC004542.1 | IG8 | 7.56 | NA% |
| 36 | SNORD78 SNORD44 | IG49 | 7.31 | NA% | SNORD79 SNORD78 | IG48 | 7.55 | NA% |
| 37 | RAB14 | IG51 | 7.26 | NA% | AC002558.1 CDC27 | IG11 | 7.52 | NA% |
| 38 | AL513007.5 RNF12 | IG37 | 7.21 | NA% | GTF3A MTIF3 | IG24 | 7.51 | NA% |
| 39 | SLC45A3 NUCKS1 | IG22 | 7.21 | NA% | RPL36 LONP1 | IG13 | 7.51 | NA% |
| 40 | TBCE B3GALNT2 | IG13 | 7.20 | NA% | SNORD22 SNORD31 | IG26 | 7.49 | NA% |
| 41 | SNORND104 SNORA76 | IG14 | 7.18 | NA% | CHRAC1 EIF2C2 | IG41 | 7.46 | NA% |
| 42 | 5S_rRNA PCGF2 | IG35 | 7.14 | NA% | EIF4EBP2 NODAL | IG22 | 7.46 | NA% |
| 43 | EMG1 LPCAT3 | IG44 | 7.12 | NA% | 5S_rRNA PCGF2 | IG35 | 7.43 | NA% |
| 44 | PCBP2 MAP3K12 | IG6 | 7.11 | NA% | PCYOX1 SNRPG | IG3 | 7.41 | NA% |
| 45 | MORC2 AC004542.1 | IG8 | 7.11 | NA% | LGALS8 HEATR1 | IG35 | 7.35 | NA% |
| 46 | GNB5 MYO5C | IG8 | 7.10 | NA% | PA2G4 ZC3H10 | IG28 | 7.35 | NA% |
| 47 | CHRAC1 EIF2C2 | IG41 | 7.08 | NA% | RABEP1 NUP88 | IG14 | 7.34 | NA% |
| 48 | SNORD60 TRAF7 | IG45 | 7.08 | NA% | HMHA1 POLR2E | IG45 | 7.34 | NA% |
| 49 | HMHA1 POLR2E | IG45 | 7.08 | NA% | MPHOSPH8 AL354808.24 | IG48 | 7.33 | NA% |
| 50 | SSSCA1 FAM89B | IG15 | 7.07 | NA% | FAM38A AC138028.1 | IG6 | 7.32 | NA% |
| 51 | RABEP1 NUP88 | IG14 | 7.07 | NA% | SSSCA1 FAM89B | IG15 | 7.30 | NA% |
| 52 | CIRBP C19orf24 | IG4 | 7.05 | NA% | SNORD78 SNORD44 | IG49 | 7.29 | NA% |
| 53 | TMEM165 CLOCK | IG26 | 7.05 | NA% | SNORD31 SNORD30 | IG27 | 7.29 | NA% |
| 54 | SYNCRIP | IG1 | 7.03 | NA% | SNORA43 SNORA17 | IG39 | 7.27 | NA% |
| 55 | ACAA2 SCARNA17 | IG30 | 7.01 | NA% | MRPL28 TMEM8 | IG23 | 7.25 | NA% |
| 56 | MMP24 EIF6 | IG25 | 7.01 | NA% | snoR38 ST6GALNAC2 | IG6 | 7.25 | NA% |
| 57 | SNORD29 SNORD28 | IG29 | 7.00 | NA% | AC011475.6 ILF3 | IG45 | 7.25 | NA% |
| 58 | TRIM44 | IG51 | 7.00 | NA% | CIRBP C19orf24 | IG4 | 7.25 | NA% |
| 59 | EIF4EBP2 NODAL | IG22 | 6.99 | NA% | LEF1 | IG51 | 7.23 | NA% |
| 60 | GTF3A MTIF3 | IG24 | 6.98 | NA% | AC069257.28 PCYT1A | IG8 | 7.21 | NA% |
| 61 | SNORD28 SNORD27 | IG30 | 6.97 | NA% | MARK2 RCOR2 | IG3 | 7.21 | NA% |
| 62 | SNORD22 SNORD31 | IG26 | 6.96 | NA% | GNB5 MYO5C | IG8 | 7.17 | NA% |
| 63 | SNORD30 SNORD29 | IG28 | 6.96 | NA% | AC012360.7 TGFBRAP1 | IG16 | 7.16 | NA% |
| 64 | TPCN1 | IG1 | 6.95 | NA% | ULK3 SCAMP2 | IG48 | 7.15 | NA% |
| 65 | PMM1 FAM152B | IG29 | 6.94 | NA% | MTHFD2 SLC4A5 | IG4 | 7.13 | NA% |
| 66 | RAI1 SREBF1 | IG3 | 6.94 | NA% | C17orf84 PLD6 | IG40 | 7.13 | NA% |
| 67 | PA2G4 ZC3H10 | IG28 | 6.91 | NA% | MYO1D | IG51 | 7.13 | NA% |
| 68 | AIM1L AL451139.40 | IG48 | 6.90 | NA% | SNORA24 PRSS12 | IG3 | 7.11 | NA% |
| 69 | VPS4A COG8 | IG35 | 6.89 | NA% | PINK1 DDOST | IG48 | 7.11 | NA% |
| 70 | SFT2D2 AL009051.1 | IG22 | 6.88 | NA% | FAM131A CLCN2 | IG7 | 7.09 | NA% |
| 71 | ARIH1 hsa-mir-630 | IG11 | 6.87 | NA% | GNAL MPPE1 | IG11 | 7.06 | NA% |
| 72 | IAH1 ADAM17 | IG42 | 6.87 | NA% | PMM1 FAM152B | IG29 | 7.04 | NA% |
| 73 | SLC16A3 CSNK1D | IG10 | 6.85 | NA% | MMP24 EIF6 | IG25 | 7.01 | NA% |
| 74 | AB019440.1 AB019440.1 | IG29 | 6.85 | NA% | SNORD27 SNORD26 | IG31 | 7.01 | NA% |
| 75 | SNORD31 SNORD30 | IG27 | 6.83 | NA% | AL513007.5 RNF12 | IG37 | 7.00 | NA% |
| 76 | WSB2 AC131238.3 | IG30 | 6.82 | NA% | POLR1E FBXO10 | IG35 | 6.96 | NA% |
| 77 | APC2 C19orf25 | IG12 | 6.81 | NA% | SAPS2 SBF1 | IG43 | 6.92 | NA% |
| 78 | GNAL MPPE1 | IG11 | 6.80 | NA% | TXNDC14 C11orf31 | IG47 | 6.86 | NA% |
| 79 | SLC25A15 hsa-mir-621 | IG23 | 6.79 | NA% | APC2 C19orf25 | IG12 | 6.84 | NA% |
| 80 | NOL7 RANBP9 | IG34 | 6.78 | NA% | EMG1 LPCAT3 | IG44 | 6.84 | NA% |
| 81 | MTHFD2 SLC4A5 | IG4 | 6.78 | NA% | VPS4A COG8 | IG35 | 6.81 | NA% |
| 82 | MRPL51 NCAPD2 | IG12 | 6.78 | NA% | TRIM44 | IG51 | 6.80 | NA% |
| 83 | MARK2 RCOR2 | IG3 | 6.77 | NA% | MLL TTC36 | IG6 | 6.80 | NA% |
| 84 | SNORA43 SNORA17 | IG39 | 6.76 | NA% | CSNK1G2 BTBD2 | IG29 | 6.80 | NA% |
| 85 | GATC SFRS9 | IG7 | 6.76 | NA% | GATC SFRS9 | IG7 | 6.80 | NA% |
| 86 | MRPL28 TMEM8 | IG23 | 6.72 | NA% | CORT DFFA | IG14 | 6.78 | NA% |
| 87 | AC007216.2 GSPT1 | IG47 | 6.72 | NA% | ACAA2 SCARNA17 | IG30 | 6.77 | NA% |
| 88 | IPO7 ZNF143 | IG34 | 6.72 | NA% | HOXB5 HOXB6 | IG41 | 6.76 | NA% |
| 89 | RP11-119B16.1 PANK2 | IG25 | 6.72 | NA% | TPCN1 | IG1 | 6.74 | NA% |
| 90 | SNORD24 | IG1 | 6.69 | NA% | TAOK1 AC104564.11 | IG9 | 6.70 | NA% |
| 91 | AC069257.28 PCYT1A | IG8 | 6.69 | NA% | SLC25A15 hsa-mir-621 | IG23 | 6.68 | NA% |
| 92 | THRAP3 AL591845.27 | IG29 | 6.69 | NA% | TBCE B3GALNT2 | IG13 | 6.68 | NA% |
| 93 | MYL6 SMARCC2 | IG32 | 6.68 | NA% | ARIH1 hsa-mir-630 | IG11 | 6.67 | NA% |
| 94 | RAB27B CCDC68 | IG9 | 6.67 | NA% | SYNCRIP | IG1 | 6.67 | NA% |
| 95 | C17orf84 PLD6 | IG40 | 6.67 | NA% | KLHL10 KLHL11 | IG19 | 6.66 | NA% |
| 96 | AC093168.3 CLDN4 | IG13 | 6.67 | NA% | PTOV1 PNKP | IG31 | 6.66 | NA% |
| 97 | SNORA24 PRSS12 | IG3 | 6.66 | NA% | SLC25A37 AC051642.5 | IG28 | 6.65 | NA% |
| 98 | HOXB9 hsa-mir-196a-1 | IG45 | 6.65 | NA% | AC007216.2 GSPT1 | IG47 | 6.63 | NA% |
| 99 | DOPEY1 PGM3 | IG31 | 6.64 | NA% | MYL6 SMARCC2 | IG32 | 6.63 | NA% |
| 100 | TNRC6C AC021593.15 | IG27 | 6.64 | NA% | NCRNA00081 | IG1 | 6.63 | NA% |