The archive 'overlap_analysis_results_summary_tables.zip' contains 13 files (excluding this README)
These files represent the summarized overlap analysis results for all for each thyroid cancer comparison group (e.g. cancer vs non-cancer)
The files have been sorted according to rank (described in manuscript).
The 'cancer_vs_noncancer_table.txt' file corresponds closely to table 4 in the manuscript.
All other files represent similar results for the other comparison groups highlighted in table 3.

Note about file names:
Each file is named in the format: conditionSet1_vs_conditionSet2
For example, one file might summarize all genes from the cancer versus non-cancer analysis.
In this case, all genes that were identified in one or more comparisons that compared cancer samples (FTC, PTC, etc) to non-cancer (FA, Norm, etc) samples would be included.
Summary information is provided according to the following headings:

Entrez_Name: : NCBI Entrez Gene name (e.g. MET)
Entrez_ID: NCBI Entrez Gene identifier (e.g. 4233)
Entrez_Description: NCBI Entrez Gene description (e.g. met proto-oncogene (hepatocyte growth factor receptor)
N_Comparisons: Total number of comparisons identifying gene X in the comparison group
Up/Down(N_Comparisons_Fold_Change): Number of fold-changes reported as up- vs. down-regulated (in brackets: The number of comparisons for which a fold change value was provided)
Total_Samples(Total_Samples_Fold_Change): Total reported samples for all comparisons for that gene (in brackets: Number of samples for only those comparisons that also provide a fold change value)
Avg_Fold_Change: Sum of reported fold-changes for gene X over the number of comparisons actually reporting a fold-change
PMIDS: Pubmed identifiers for studies/comparisons reporting gene X as differentially expressed.