Study Comparison Entry Entrez_id Entrez_name Entrez_description Map_method n_studies n_comparisons n_total_samples net_fold_change net_direction net_direction_score n_disagreements up_down avg_fold_change n_comparisons_FC n_total_samples_FC max_fold_change min_fold_change Probe_Tag_Acc Probe Tag Accession Description Gene Fold_change Std_Fold_Change up_down_cond1_vs_cond2 RT-PCR Western IHC Class_predictor Signif Pvalue_listed Cond1 Cond2 n_cond1 n_cond2 Source Comment PMID 25 34 1628 29 ABR active BCR-related gene affy_probe_2_Entrez 1 1 55 2.15 up 1 0 1/0 2.15 1 55 2.15 2.15 212895_s_at 212895_s_at active BCR-related gene ABR 2.147 2.15 up 0.001479792 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 506 50 ACO2 aconitase 2, mitochondrial clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.3 down 1 0 0/1 -2.3 1 35 -2.30 -2.30 NM_001098 NM_001098 Nuclear aconitase ACO2 2.3 -2.30 down PTC;FVPTC FA;HN 14 21 publication 15240595 4 8 357 90 ACVR1 activin A receptor, type I affy_probe_2_Entrez 1 1 28 0 up 1 0 1/0 0 0 0 0 0 39764_at 39764_at activin A receptor, type I_ACVR1 ACVR1 up PTC FTC;Norm 6 22 provided by authors 15337802 16 24 1239 97 ACYP1 acylphosphatase 1, erythrocyte (common) type Gene_symbol_2_NCBI_Entrez 1 1 63 -1.94 down 1 0 0/1 -1.94 1 63 -1.94 -1.94 ACYP1 0.516587678 -1.94 down 0.01 PTC;FVPTC FA;HN 32 31 publication 15087409 25 34 1724 125 ADH1B alcohol dehydrogenase IB (class I), beta polypeptide affy_probe_2_Entrez 1 1 55 -4.72 down 1 0 0/1 -4.72 1 55 -4.72 -4.72 209612_s_at 209612_s_at alcohol dehydrogenase IB (class I), beta polypeptide ADH1B -3.897 -3.90 down 1.11929E-07 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1736 125 ADH1B alcohol dehydrogenase IB (class I), beta polypeptide affy_probe_2_Entrez 1 1 55 -4.72 down 1 0 0/1 -4.72 1 55 -4.72 -4.72 209613_s_at 209613_s_at alcohol dehydrogenase IB (class I), beta polypeptide ADH1B -4.720 -4.72 down 1.3149E-06 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1607 132 ADK adenosine kinase affy_probe_2_Entrez 1 1 55 2.76 up 1 0 1/0 2.76 1 55 2.76 2.76 204120_s_at 204120_s_at adenosine kinase ADK 2.762 2.76 up 0.002061785 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 448 133 ADM adrenomedullin clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 3.3 up 1 0 1/0 3.3 1 35 3.30 3.30 D14874 D14874 Adrenomedullin AM 3.3 3.30 up yes PTC;FVPTC FA;HN 14 21 publication 15240595 3 6 124 134 ADORA1 adenosine A1 receptor clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 16 8.1 up 1 0 1/0 8.1 1 16 8.10 8.10 L22214 L22214 Adenosine A1 receptor ADORA1 8.1 8.10 up yes 0.0003 PTC Norm 8 8 suppl. materials 11752453 24 33 1505 143 PARP4 poly (ADP-ribose) polymerase family, member 4 Gene_symbol_2_NCBI_Synonym_2_Entrez 1 1 32 2.07 up 1 0 1/0 2.07 1 32 2.07 2.07 ADP-ribosyltransferase (NAD+; poly(ADP-ribose) polymerase)-like 1 ADPRTL1 1.05 2.07 up PTC Norm 16 16 publication 15735049 12 19 849 196 AHR aryl hydrocarbon receptor clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 56 5.6 up 2 0 2/0 2.8 2 56 3.20 2.40 L19872 L19872 AHR 3.2 3.20 up PTC Norm 18 3 publication 12538453 7 12 498 196 AHR aryl hydrocarbon receptor clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 56 5.6 up 2 0 2/0 2.8 2 56 3.20 2.40 L19872 L19872 Aryl hydrocarbon receptor AHR 2.4 2.40 up PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1577 221 ALDH3B1 aldehyde dehydrogenase 3 family, member B1 affy_probe_2_Entrez 2 2 90 7.22 up 2 0 2/0 3.61 2 90 5.02 2.20 205640_at 205640_at aldehyde dehydrogenase 3 family, member B1 ALDH3B1 5.022 5.02 up 0.006205547 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 518 221 ALDH3B1 aldehyde dehydrogenase 3 family, member B1 clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 90 7.22 up 2 0 2/0 3.61 2 90 5.02 2.20 U10868 U10868 Aldehyde dehydrogenase ALDH4 2.2 2.20 up PTC;FVPTC FA;HN 14 21 publication 15240595 17 29 1288 226 ALDOA aldolase A, fructose-bisphosphate tag_2_refseq_or_mgc_2_Entrez 2 2 37 -3.2 even 1 1 1/1 -3.2 1 35 -3.20 -3.20 GCGACCGTCA GCGACCGTCA up PTC FA 1 1 publication 11076659 7 12 451 226 ALDOA aldolase A, fructose-bisphosphate clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 37 -3.2 even 1 1 1/1 -3.2 1 35 -3.20 -3.20 X05236 X05236 Aldolase A ALDOA 3.2 -3.20 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1639 274 BIN1 bridging integrator 1 affy_probe_2_Entrez 1 1 55 -2.05 down 1 0 0/1 -2.05 1 55 -2.05 -2.05 202931_x_at 202931_x_at bridging integrator 1 BIN1 -2.045 -2.05 down 0.000707103 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 456 284 ANGPT1 angiopoietin 1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -3.1 down 1 0 0/1 -3.1 1 35 -3.10 -3.10 U83508 U83508 Angiopoietin-1 ANG1 3.1 -3.10 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1725 287 ANK2 ankyrin 2, neuronal affy_probe_2_Entrez 1 1 55 -3.91 down 1 0 0/1 -3.91 1 55 -3.91 -3.91 202920_at 202920_at ankyrin 2, neuronal ANK2 -3.907 -3.91 down 0.001598156 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 4 8 340 301 ANXA1 annexin A1 affy_probe_2_Entrez 2 2 63 3.3 up 2 0 2/0 3.3 1 35 3.30 3.30 37403_at 37403_at annexin A1_ANXA1 ANXA1 up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 446 301 ANXA1 annexin A1 clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 63 3.3 up 2 0 2/0 3.3 1 35 3.30 3.30 X05908 X05908 Lipocortin LPC1 3.3 3.30 up PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1710 316 AOX1 aldehyde oxidase 1 affy_probe_2_Entrez 1 1 55 -5.42 down 1 0 0/1 -5.42 1 55 -5.42 -5.42 205082_s_at 205082_s_at aldehyde oxidase 1 AOX1 -3.450 -3.45 down 0.000290156 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1746 316 AOX1 aldehyde oxidase 1 affy_probe_2_Entrez 1 1 55 -5.42 down 1 0 0/1 -5.42 1 55 -5.42 -5.42 205083_at 205083_at aldehyde oxidase 1 AOX1 -5.418 -5.42 down 2.51791E-10 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 3 6 158 347 APOD apolipoprotein D clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 16 -6.1 down 1 0 0/1 -6.1 1 16 -6.10 -6.10 J02611 J02611 Apolipoprotein D APOD -6.1 -6.10 down no 0.0133 PTC Norm 8 8 suppl. materials 11752453 7 12 485 475 ATOX1 ATX1 antioxidant protein 1 homolog (yeast) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.6 down 1 0 0/1 -2.6 1 35 -2.60 -2.60 U70660 U70660 Human ATX1 homolog HAH1 2.6 -2.60 down PTC;FVPTC FA;HN 14 21 publication 15240595 16 24 1224 501 ALDH7A1 aldehyde dehydrogenase 7 family, member A1 Gene_symbol_2_NCBI_Entrez 1 1 63 -1.68 down 1 0 0/1 -1.68 1 63 -1.68 -1.68 ALDH7A1 0.596273292 -1.68 down 0.04 PTC;FVPTC FA;HN 32 31 publication 15087409 7 12 512 516 ATP5G1 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.3 down 1 0 0/1 -2.3 1 35 -2.30 -2.30 X69907 X69907 Mitochondrial ATP synthase c subunit ATP5G 2.3 -2.30 down PTC;FVPTC FA;HN 14 21 publication 15240595 14 21 995 595 CCND1 cyclin D1 (PRAD1: parathyroid adenomatosis 1) Gene_symbol_2_NCBI_Entrez 4 4 129 5.86 up 4 0 4/0 2.93 2 87 3.37 2.49 cyclin D1 CCND1 up PTC Norm 7 7 publication The gene name for this entry was determined manually from the description 15041723 24 33 1499 595 CCND1 cyclin D1 (PRAD1: parathyroid adenomatosis 1) Gene_symbol_2_NCBI_Entrez 4 4 129 5.86 up 4 0 4/0 2.93 2 87 3.37 2.49 Cyclin D1 (PRAD1: parathyroid adenomatosis 1) CCND1 1.315 2.49 up PTC Norm 16 16 publication 15735049 25 34 1591 595 CCND1 cyclin D1 (PRAD1: parathyroid adenomatosis 1) affy_probe_2_Entrez 4 4 129 5.86 up 4 0 4/0 2.93 2 87 3.37 2.49 208712_at 208712_at cyclin D1 (PRAD1: parathyroid adenomatosis 1) CCND1 3.547 3.55 up 9.91401E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1594 595 CCND1 cyclin D1 (PRAD1: parathyroid adenomatosis 1) affy_probe_2_Entrez 4 4 129 5.86 up 4 0 4/0 2.93 2 87 3.37 2.49 208711_s_at 208711_s_at cyclin D1 (PRAD1: parathyroid adenomatosis 1) CCND1 3.368 3.37 up 0.007940327 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 4 8 341 595 CCND1 cyclin D1 (PRAD1: parathyroid adenomatosis 1) affy_probe_2_Entrez 4 4 129 5.86 up 4 0 4/0 2.93 2 87 3.37 2.49 2017_s_at 2017_s_at cyclin D1 (PRAD1: parathyroid adenomatosis 1)_CCND1 CCND1 up PTC FTC;Norm 6 22 provided by authors 15337802 4 8 351 595 CCND1 cyclin D1 (PRAD1: parathyroid adenomatosis 1) affy_probe_2_Entrez 4 4 129 5.86 up 4 0 4/0 2.93 2 87 3.37 2.49 38418_at 38418_at cyclin D1 (PRAD1: parathyroid adenomatosis 1)_CCND1 CCND1 up PTC FTC;Norm 6 22 provided by authors 15337802 4 8 352 595 CCND1 cyclin D1 (PRAD1: parathyroid adenomatosis 1) affy_probe_2_Entrez 4 4 129 5.86 up 4 0 4/0 2.93 2 87 3.37 2.49 2020_at 2020_at cyclin D1 (PRAD1: parathyroid adenomatosis 1)_CCND1 CCND1 up PTC FTC;Norm 6 22 provided by authors 15337802 3 6 138 596 BCL2 B-cell CLL/lymphoma 2 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 16 -2.2 down 1 0 0/1 -2.2 1 16 -2.20 -2.20 M14745 M14745 Bcl-2 BCL2 -2.2 -2.20 down no 0.0005 PTC Norm 8 8 suppl. materials 11752453 7 12 465 622 BDH 3-hydroxybutyrate dehydrogenase (heart, mitochondrial) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.9 down 1 0 0/1 -2.9 1 35 -2.90 -2.90 M93107 M93107 Heart (R)-3-hydroxybutyrate dehydrogenase BDH 2.9 -2.90 down PTC;FVPTC FA;HN 14 21 publication 15240595 24 33 1509 649 BMP1 bone morphogenetic protein 1 Gene_symbol_2_NCBI_Entrez 2 2 87 4.03 up 2 0 2/0 2.015 2 87 2.08 1.95 Bone morphogenetic protein 1 BMP1 0.965 1.95 up PTC Norm 16 16 publication 15735049 25 34 1633 649 BMP1 bone morphogenetic protein 1 affy_probe_2_Entrez 2 2 87 4.03 up 2 0 2/0 2.015 2 87 2.08 1.95 205574_x_at 205574_x_at bone morphogenetic protein 1 BMP1 2.080 2.08 up 0.015787118 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1697 650 BMP2 bone morphogenetic protein 2 affy_probe_2_Entrez 1 1 55 -3.11 down 1 0 0/1 -3.11 1 55 -3.11 -3.11 205290_s_at 205290_s_at bone morphogenetic protein 2 BMP2 -3.107 -3.11 down 0.001274387 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 14 21 1005 653 BMP5 bone morphogenetic protein 5 Gene_symbol_2_NCBI_Entrez 1 1 14 0 up 1 0 1/0 0 0 0 0 0 BMP5 BMP5 up PTC Norm 7 7 publication The gene name for this entry was determined manually from the description 15041723 2 4 98 663 BNIP2 BCL2/adenovirus E1B 19kDa interacting protein 2 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 2 -8.2 down 1 0 0/1 -8.2 1 2 -8.20 -8.20 NM_004330 NM_004330 BCL2/adenovirus E1B 19kd interacting protein 2 BNP2 8.2 -8.20 down PCL Norm 1 1 publication 15785240 7 12 491 678 ZFP36L2 zinc finger protein 36, C3H type-like 2 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.5 down 1 0 0/1 -2.5 1 35 -2.50 -2.50 X78992 X78992 Human homolog of mouse Tis11d early response gene ERF2 2.5 -2.50 down PTC;FVPTC FA;HN 14 21 publication 15240595 16 24 1244 744 C11orf8 chromosome 11 open reading frame 8 Gene_symbol_2_NCBI_Entrez 3 3 134 -21.14 down 3 0 0/3 -7.04666666666667 3 134 -2.25 -12.49 C11orf8 0.444444444 -2.25 down yes 0.02 PTC;FVPTC FA;HN 32 31 publication 15087409 25 34 1751 744 C11orf8 chromosome 11 open reading frame 8 affy_probe_2_Entrez 3 3 134 -21.14 down 3 0 0/3 -7.04666666666667 3 134 -2.25 -12.49 215692_s_at 215692_s_at chromosome 11 open reading frame 8 C11orf8 -5.823 -5.82 down 1.41784E-06 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1778 744 C11orf8 chromosome 11 open reading frame 8 affy_probe_2_Entrez 3 3 134 -21.14 down 3 0 0/3 -7.04666666666667 3 134 -2.25 -12.49 205413_at 205413_at chromosome 11 open reading frame 8 C11orf8 -12.491 -12.49 down 0.001239578 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 3 6 159 744 C11orf8 chromosome 11 open reading frame 8 clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 134 -21.14 down 3 0 0/3 -7.04666666666667 3 134 -2.25 -12.49 U57911 U57911 Chromosome 11 open reading frame 8 C11ORF8 -6.4 -6.40 down no 0.003 PTC Norm 8 8 suppl. materials 11752453 16 24 1223 757 TMEM50B transmembrane protein 50B Gene_symbol_2_NCBI_Synonym_2_Entrez 1 1 63 -1.67 down 1 0 0/1 -1.67 1 63 -1.67 -1.67 C21orf4 0.597402597 -1.67 down yes 0.0001 PTC;FVPTC FA;HN 32 31 publication 15087409 25 34 1733 762 CA4 carbonic anhydrase IV affy_probe_2_Entrez 2 2 90 -7.11 down 2 0 0/2 -3.555 2 90 -2.50 -4.61 206209_s_at 206209_s_at carbonic anhydrase IV CA4 -4.612 -4.61 down 0.002308296 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 493 762 CA4 carbonic anhydrase IV clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 90 -7.11 down 2 0 0/2 -3.555 2 90 -2.50 -4.61 M83670 M83670 Carbonic anhydrase IV CAIV 2.5 -2.50 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1665 862 RUNX1T1 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) affy_probe_2_Entrez 1 1 55 -2.49 down 1 0 0/1 -2.49 1 55 -2.49 -2.49 205529_s_at 205529_s_at core-binding factor, runt domain, alpha subunit 2; translocated to, 1; cyclin D-related CBFA2T1 -2.493 -2.49 down 0.000490859 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1500 894 CCND2 cyclin D2 Gene_symbol_2_NCBI_Entrez 1 1 32 2.48 up 1 0 1/0 2.48 1 32 2.48 2.48 Cyclin D2 CCND2 1.31 2.48 up PTC Norm 16 16 publication 15735049 14 21 979 900 CCNG1 cyclin G1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 2.8 up 1 0 1/0 2.8 1 14 2.80 2.80 AA082943 AA082943 Cyclin G1 2.8 2.80 up PTC Norm 7 7 publication 15041723 14 21 994 902 CCNH cyclin H Gene_symbol_2_NCBI_Entrez 1 1 14 0 up 1 0 1/0 0 0 0 0 0 Tetracycline transporter-like protein Cyclin H CCNH up PTC Norm 7 7 publication The gene name for this entry was determined manually from the description 15041723 25 34 1551 953 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 affy_probe_2_Entrez 1 1 55 6.4 up 1 0 1/0 6.4 1 55 6.40 6.40 209474_s_at 209474_s_at ectonucleoside triphosphate diphosphohydrolase 1 ENTPD1 14.021 14.02 up 0.000215841 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1558 953 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 affy_probe_2_Entrez 1 1 55 6.4 up 1 0 1/0 6.4 1 55 6.40 6.40 207691_x_at 207691_x_at ectonucleoside triphosphate diphosphohydrolase 1 ENTPD1 9.429 9.43 up 0.001074251 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1568 953 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 affy_probe_2_Entrez 1 1 55 6.4 up 1 0 1/0 6.4 1 55 6.40 6.40 209473_at 209473_at ectonucleoside triphosphate diphosphohydrolase 1 ENTPD1 6.398 6.40 up 0.005195822 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1504 960 CD44 CD44 antigen (homing function and Indian blood group system) Gene_symbol_2_NCBI_Entrez 2 2 87 4.87 up 2 0 2/0 2.435 2 87 2.63 2.24 CD44 antigen (homing function and Indian blood group system) CD44 1.165 2.24 up PTC Norm 16 16 publication 15735049 25 34 1605 960 CD44 CD44 antigen (homing function and Indian blood group system) affy_probe_2_Entrez 2 2 87 4.87 up 2 0 2/0 2.435 2 87 2.63 2.24 204490_s_at 204490_s_at CD44 antigen (homing function and Indian blood group system) CD44 2.831 2.83 up 0.005179358 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1606 960 CD44 CD44 antigen (homing function and Indian blood group system) affy_probe_2_Entrez 2 2 87 4.87 up 2 0 2/0 2.435 2 87 2.63 2.24 212014_x_at 212014_x_at CD44 antigen (homing function and Indian blood group system) CD44 2.819 2.82 up 0.009385995 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1610 960 CD44 CD44 antigen (homing function and Indian blood group system) affy_probe_2_Entrez 2 2 87 4.87 up 2 0 2/0 2.435 2 87 2.63 2.24 209835_x_at 209835_x_at CD44 antigen (homing function and Indian blood group system) CD44 2.628 2.63 up 0.024470493 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 17 28 1274 972 CD74 CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated) tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 down 1 0 0/1 0 0 0 0 0 GTTCACATTA GTTCACATTA down PTC ATC 1 1 publication 11076659 3 6 143 984 CDC2L1 cell division cycle 2-like 1 (PITSLRE proteins) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 16 -2.4 down 1 0 0/1 -2.4 1 16 -2.40 -2.40 M37712 M37712 P58/GTA (galactosyltransferase associated protein kinase) CDC2L1 -2.4 -2.40 down no 0.0035 PTC Norm 8 8 suppl. materials 11752453 14 21 981 999 CDH1 cadherin 1, type 1, E-cadherin (epithelial) clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 77 1.06 even 1 1 1/1 0.53 2 77 2.80 -1.74 H97778 H97778 E-cadherin 2.8 2.80 up PTC Norm 7 7 publication 15041723 16 24 1216 999 CDH1 cadherin 1, type 1, E-cadherin (epithelial) Gene_symbol_2_NCBI_Entrez 2 2 77 1.06 even 1 1 1/1 0.53 2 77 2.80 -1.74 CDH1 0.625954198 -1.60 down 0.04 PTC;FVPTC FA;HN 32 31 publication 15087409 16 24 1228 999 CDH1 cadherin 1, type 1, E-cadherin (epithelial) Gene_symbol_2_NCBI_Entrez 2 2 77 1.06 even 1 1 1/1 0.53 2 77 2.80 -1.74 CDH1 0.57615894 -1.74 down yes 0.001 PTC;FVPTC FA;HN 32 31 publication 15087409 24 33 1444 1001 CDH3 cadherin 3, type 1, P-cadherin (placental) Gene_symbol_2_NCBI_Entrez 2 2 87 89.82 up 2 0 2/0 44.91 2 87 48.84 40.98 Cadherin 3, type 1, P-cadherin (placental) CDH3 5.61 48.84 up PTC Norm 16 16 publication 15735049 25 34 1545 1001 CDH3 cadherin 3, type 1, P-cadherin (placental) affy_probe_2_Entrez 2 2 87 89.82 up 2 0 2/0 44.91 2 87 48.84 40.98 203256_at 203256_at cadherin 3, type 1, P-cadherin (placental) CDH3 40.978 40.98 up 1.95563E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 2 4 104 1006 CDH8 cadherin 8, type 2 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 2 -4.2 down 1 0 0/1 -4.2 1 2 -4.20 -4.20 NM_001796 NM_001796 Cadherin 8, type 2 CDH8 4.2 -4.20 down yes PCL Norm 1 1 publication 15785240 25 34 1773 1014 CDH16 cadherin 16, KSP-cadherin affy_probe_2_Entrez 1 1 55 -9.33 down 1 0 0/1 -9.33 1 55 -9.33 -9.33 206517_at 206517_at cadherin 16, KSP-cadherin CDH16 -9.334 -9.33 down 3.20661E-06 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 14 21 993 1015 CDH17 cadherin 17, LI cadherin (liver-intestine) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 2 up 1 0 1/0 2 1 14 2.00 2.00 AA088861 AA088861 LI-cadherin 2 2.00 up PTC Norm 7 7 publication 15041723 25 34 1635 1039 CDR2 cerebellar degeneration-related protein 2, 62kDa affy_probe_2_Entrez 1 1 55 -2 down 1 0 0/1 -2 1 55 -2.00 -2.00 209501_at 209501_at cerebellar degeneration-related protein 2, 62kDa CDR2 -2.004 -2.00 down 0.000976225 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1479 1075 CTSC cathepsin C Gene_symbol_2_NCBI_Entrez 3 3 95 7.32 up 3 0 3/0 3.66 2 67 4.72 2.60 Cathepsin C CTSC 2.24 4.72 up PTC Norm 16 16 publication 15735049 4 8 373 1075 CTSC cathepsin C affy_probe_2_Entrez 3 3 95 7.32 up 3 0 3/0 3.66 2 67 4.72 2.60 133_at 133_at cathepsin C_CTSC CTSC up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 478 1075 CTSC cathepsin C clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 95 7.32 up 3 0 3/0 3.66 2 67 4.72 2.60 X87212 X87212 Cathepsin C CPP1 2.6 2.60 up PTC;FVPTC FA;HN 14 21 publication 15240595 14 21 991 1107 CHD3 chromodomain helicase DNA binding protein 3 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 2 up 1 0 1/0 2 1 14 2.00 2.00 AA778077 AA778077 Chromodomain helicase DNA binding protein 3 2 2.00 up PTC Norm 7 7 publication 15041723 25 34 1727 1113 CHGA chromogranin A (parathyroid secretory protein 1) affy_probe_2_Entrez 1 1 55 -4.02 down 1 0 0/1 -4.02 1 55 -4.02 -4.02 204697_s_at 204697_s_at chromogranin A (parathyroid secretory protein 1) CHGA -4.017 -4.02 down 0.013328833 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1445 1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39) Gene_symbol_2_NCBI_Entrez 3 3 76 49.56 up 3 0 3/0 24.78 2 48 27.70 21.86 Chitinase 3-like 1 (cartilage glycoprotein-39) CHI3L1 4.45 21.86 up PTC Norm 16 16 publication 15735049 3 6 114 1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39) clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 76 49.56 up 3 0 3/0 24.78 2 48 27.70 21.86 Y08374 Y08374 Cartilage GP-39 CHI3L1 27.7 27.70 up yes 0.002 PTC Norm 8 8 suppl. materials 11752453 4 8 326 1116 CHI3L1 chitinase 3-like 1 (cartilage glycoprotein-39) affy_probe_2_Entrez 3 3 76 49.56 up 3 0 3/0 24.78 2 48 27.70 21.86 36197_at 36197_at chitinase 3-like 1 (cartilage glycoprotein-39)_CHI3L1 CHI3L1 up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 418 1152 CKB creatine kinase, brain clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -3.9 down 1 0 0/1 -3.9 1 35 -3.90 -3.90 X15334 X15334 Creatine kinase B CKBB 5.7 -5.70 down PTC;FVPTC FA;HN 14 21 publication 15240595 7 12 435 1152 CKB creatine kinase, brain clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -3.9 down 1 0 0/1 -3.9 1 35 -3.90 -3.90 X15334 X15334 Creatine kinase B CKBB 3.9 -3.90 down PTC;FVPTC FA;HN 14 21 publication 15240595 4 8 311 1191 CLU clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J) affy_probe_2_Entrez 1 1 28 0 up 1 0 1/0 0 0 0 0 0 36780_at 36780_at clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J)_CLU CLU up PTC FTC;Norm 6 22 provided by authors 15337802 17 28 1275 1277 COL1A1 collagen, type I, alpha 1 tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 down 1 0 0/1 0 0 0 0 0 TGGAAATGAC TGGAAATGAC down PTC ATC 1 1 publication 11076659 17 28 1277 1277 COL1A1 collagen, type I, alpha 1 tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 down 1 0 0/1 0 0 0 0 0 ACCAAAAACC ACCAAAAACC down PTC ATC 1 1 publication 11076659 10 16 712 1293 COL6A3 collagen, type VI, alpha 3 affy_probe_2_Entrez 1 1 14 8.54 up 1 0 1/0 8.54 1 14 8.54 8.54 38077_at 38077_at Collagen, type VI, alpha 3 COL6A3 8.54 8.54 up no PTC GT 8 6 publication 15515157 7 12 488 1295 COL8A1 collagen, type VIII, alpha 1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 2.5 up 1 0 1/0 2.5 1 35 2.50 2.50 X57527 X57527 alpha 1 (VIII) collagen COL8A1 2.5 2.50 up PTC;FVPTC FA;HN 14 21 publication 15240595 24 33 1482 1296 COL8A2 collagen, type VIII, alpha 2 Gene_symbol_2_NCBI_Entrez 1 1 32 3.97 up 1 0 1/0 3.97 1 32 3.97 3.97 Collagen, type VIII, alpha2 COL8A2 1.99 3.97 up PTC Norm 16 16 publication 15735049 10 16 746 1299 COL9A3 collagen, type IX, alpha 3 affy_probe_2_Entrez 3 3 104 -93.12 down 3 0 0/3 -31.04 3 104 -10.03 -55.70 36455_at 36455_at Collagen, type IX, alpha 3 COL9A3 -10.03 -10.03 down yes PTC GT 8 6 publication 15515157 25 34 1784 1299 COL9A3 collagen, type IX, alpha 3 affy_probe_2_Entrez 3 3 104 -93.12 down 3 0 0/3 -31.04 3 104 -10.03 -55.70 204724_s_at 204724_s_at collagen, type IX, alpha 3 COL9A3 -27.386 -27.39 down 0.002882418 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 408 1299 COL9A3 collagen, type IX, alpha 3 clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 104 -93.12 down 3 0 0/3 -31.04 3 104 -10.03 -55.70 L41162 L41162 Collagen alpha 3 type IX EDM3 55.7 -55.70 down PTC;FVPTC FA;HN 14 21 publication 15240595 24 33 1471 1305 COL13A1 collagen, type XIII, alpha 1 Gene_symbol_2_NCBI_Entrez 1 1 32 5.46 up 1 0 1/0 5.46 1 32 5.46 5.46 Collagen, type XIII, alpha 1 COL13A1 2.45 5.46 up PTC Norm 16 16 publication 15735049 24 33 1454 1311 COMP cartilage oligomeric matrix protein Gene_symbol_2_NCBI_Entrez 1 1 32 14.27 up 1 0 1/0 14.27 1 32 14.27 14.27 Cartilage oligomeric matrix protein COMP 3.835 14.27 up PTC Norm 16 16 publication 15735049 10 17 754 1381 CRABP1 cellular retinoic acid binding protein 1 affy_probe_2_Entrez 4 4 122 -49.19 down 4 0 0/4 -12.2975 4 122 -5.20 -24.45 542_at 542_at Cellular retinoic acid binding protein 1 CRABP1 -11.84 -11.84 down yes yes PTC Norm 8 8 publication 15515157 25 34 1782 1381 CRABP1 cellular retinoic acid binding protein 1 affy_probe_2_Entrez 4 4 122 -49.19 down 4 0 0/4 -12.2975 4 122 -5.20 -24.45 205350_at 205350_at cellular retinoic acid binding protein 1 CRABP1 -24.447 -24.45 down 0.00016996 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 3 6 160 1381 CRABP1 cellular retinoic acid binding protein 1 clone_accession_2_NCBI_rna_accession_2_Entrez 4 4 122 -49.19 down 4 0 0/4 -12.2975 4 122 -5.20 -24.45 S74445 S74445 Cellular retinoic acid-binding protein CRABP1 -7.7 -7.70 down no 0.01 PTC Norm 8 8 suppl. materials 11752453 7 12 422 1381 CRABP1 cellular retinoic acid binding protein 1 clone_accession_2_NCBI_rna_accession_2_Entrez 4 4 122 -49.19 down 4 0 0/4 -12.2975 4 122 -5.20 -24.45 S74445 S74445 Cellular retinoic acid-binding protein-1 CRABPI 5.2 -5.20 down PTC;FVPTC FA;HN 14 21 publication 15240595 2 4 97 1387 CREBBP CREB binding protein (Rubinstein-Taybi syndrome) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 2 -10.2 down 1 0 0/1 -10.2 1 2 -10.20 -10.20 NM_004380 NM_004380 CREB binding protein CREBBP 10.2 -10.20 down PCL Norm 1 1 publication 15785240 19 32 1407 1429 CRYZ crystallin, zeta (quinone reductase) tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 up 1 0 1/0 0 0 0 0 0 ACTGTATTGG ACTGTATTGG quinone reductase (crystallin Z) up 0.0245 FVPTC Norm 1 1 publication 14715705 14 21 975 1464 CSPG4 chondroitin sulfate proteoglycan 4 (melanoma-associated) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 3.1 up 1 0 1/0 3.1 1 14 3.10 3.10 R53541 R53541 Melanoma-associated chondroitin sulfate proteoglycan 3.1 3.10 up PTC Norm 7 7 publication 15041723 3 6 120 1474 CST6 cystatin E/M clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 44 9 up 2 0 2/0 9 1 16 9.00 9.00 W68521 W68521 Cystatin E/M CST6 9 9.00 up no 0.003 PTC Norm 8 8 suppl. materials 11752453 4 8 321 1474 CST6 cystatin E/M affy_probe_2_Entrez 2 2 44 9 up 2 0 2/0 9 1 16 9.00 9.00 33128_s_at 33128_s_at cystatin E/M_CST6 CST6 up PTC FTC;Norm 6 22 provided by authors 15337802 24 33 1536 1491 CTH cystathionase (cystathionine gamma-lyase) Gene_symbol_2_NCBI_Entrez 1 1 32 -2.58 down 1 0 0/1 -2.58 1 32 -2.58 -2.58 Cystathionase (cystathionine gamma-lyase) CTH -1.365 -2.58 down PTC Norm 16 16 publication 15735049 4 8 364 1512 CTSH cathepsin H affy_probe_2_Entrez 2 2 63 3.1 up 2 0 2/0 3.1 1 35 3.10 3.10 37021_at 37021_at cathepsin H_CTSH CTSH up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 453 1512 CTSH cathepsin H clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 63 3.1 up 2 0 2/0 3.1 1 35 3.10 3.10 X16832 X16832 Preprocathepsin H CPSB 3.1 3.10 up PTC;FVPTC FA;HN 14 21 publication 15240595 2 4 101 1514 CTSL cathepsin L clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 2 -6.1 down 1 0 0/1 -6.1 1 2 -6.10 -6.10 NM_001912 NM_001912 Cathepsin L CTSL 6.1 -6.10 down PCL Norm 1 1 publication 15785240 10 16 734 1525 CXADR coxsackie virus and adenovirus receptor affy_probe_2_Entrez 1 1 14 -3.33 down 1 0 0/1 -3.33 1 14 -3.33 -3.33 37534_at 37534_at Coxsackievirus and adenovirus receptor CXADR -3.33 -3.33 down yes PTC GT 8 6 publication 15515157 12 19 843 1536 CYBB cytochrome b-245, beta polypeptide (chronic granulomatous disease) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 21 7.7 up 1 0 1/0 7.7 1 21 7.70 7.70 X04011 X04011 CGD 7.7 7.70 up PTC Norm 18 3 publication 12538453 7 12 538 1537 CYC1 cytochrome c-1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.1 down 1 0 0/1 -2.1 1 35 -2.10 -2.10 J04444 J04444 Cytochrome e-1 CYC1 2.1 -2.10 down PTC;FVPTC FA;HN 14 21 publication 15240595 7 12 414 1545 CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 7.3 up 1 0 1/0 7.3 1 35 7.30 7.30 U03688 U03688 Dioxin-inducible cytochrome P450 GLC3A 7.3 7.30 up PTC;FVPTC FA;HN 14 21 publication 15240595 7 12 477 1594 CYP27B1 cytochrome P450, family 27, subfamily B, polypeptide 1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.7 down 1 0 0/1 -2.7 1 35 -2.70 -2.70 AB005038 AB005038 25-Hydroxyvitamin D3 1-alpha-hydroxylase PDDR 2.7 -2.70 down PTC;FVPTC FA;HN 14 21 publication 15240595 4 8 327 1604 DAF decay accelerating factor for complement (CD55, Cromer blood group system) affy_probe_2_Entrez 1 1 28 0 up 1 0 1/0 0 0 0 0 0 39695_at 39695_at decay accelerating factor for complement (CD55, Cromer blood group system)_DAF DAF up PTC FTC;Norm 6 22 provided by authors 15337802 3 6 152 1645 AKR1C1 aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase) clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 51 -6.8 down 2 0 0/2 -3.4 2 51 -3.30 -3.50 U05861 U05861 Hepatic dihydrodiol dehydrogenase AKR1C2 -3.5 -3.50 down no 0.0015 PTC Norm 8 8 suppl. materials 11752453 7 12 450 1645 AKR1C1 aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase) clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 51 -6.8 down 2 0 0/2 -3.4 2 51 -3.30 -3.50 U05861 U05861 Hepatic dihydrodiol dehydrogenase DDH 3.3 -3.30 down PTC;FVPTC FA;HN 14 21 publication 15240595 12 19 860 1649 DDIT3 DNA-damage-inducible transcript 3 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 21 -3.85 down 1 0 0/1 -3.85 1 21 -3.85 -3.85 S40706 S40706 Growth arrest and DNA damage-inducible protein GADD153 (DDIT3) 0.26 -3.85 down yes PTC Norm 18 3 publication 12538453 25 34 1764 1675 DF D component of complement (adipsin) affy_probe_2_Entrez 1 1 55 -7 down 1 0 0/1 -7 1 55 -7.00 -7.00 205382_s_at 205382_s_at D component of complement (adipsin) DF -6.998 -7.00 down 0.000843024 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 3 6 155 1733 DIO1 deiodinase, iodothyronine, type I clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 16 -5.2 down 1 0 0/1 -5.2 1 16 -5.20 -5.20 S48220 S48220 Type I 5 iodothyronine deiodinase DIO1 -5.2 -5.20 down no 0.005 PTC Norm 8 8 suppl. materials 11752453 16 24 1246 1734 DIO2 deiodinase, iodothyronine, type II Gene_symbol_2_NCBI_Entrez 3 3 114 -7.89 down 3 0 0/3 -2.63 3 114 -2.20 -2.90 DIO2 0.358974359 -2.79 down 0.02 PTC;FVPTC FA;HN 32 31 publication 15087409 3 6 139 1734 DIO2 deiodinase, iodothyronine, type II clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 114 -7.89 down 3 0 0/3 -2.63 3 114 -2.20 -2.90 AF093774 AF093774 Type 2 iodothyronine deiodinase DIO2 -2.2 -2.20 down no 0.0022 PTC Norm 8 8 suppl. materials 11752453 7 12 464 1734 DIO2 deiodinase, iodothyronine, type II clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 114 -7.89 down 3 0 0/3 -2.63 3 114 -2.20 -2.90 AF093774 AF093774 Selenocysteine TXD12 2.9 -2.90 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1636 1740 DLG2 discs, large homolog 2, chapsyn-110 (Drosophila) affy_probe_2_Entrez 1 1 55 -2.01 down 1 0 0/1 -2.01 1 55 -2.01 -2.01 206253_at 206253_at discs, large homolog 2, chapsyn-110 (Drosophila) DLG2 -2.010 -2.01 down 0.000857183 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 12 19 854 1741 DLG3 discs, large homolog 3 (neuroendocrine-dlg, Drosophila) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 21 -2.08 down 1 0 0/1 -2.08 1 21 -2.08 -2.08 U49089 U49089 Neuroendocrine-DLG, tumor suppressor protein interacting with the adenomatous polyposis coli protein (DLG3) 0.48 -2.08 down PTC Norm 18 3 publication 12538453 4 8 345 1756 DMD dystrophin (muscular dystrophy, Duchenne and Becker types) affy_probe_2_Entrez 2 2 63 3.4 up 2 0 2/0 3.4 1 35 3.40 3.40 40488_at 40488_at dystrophin (muscular dystrophy, Duchenne and Becker types)_DMD DMD up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 443 1756 DMD dystrophin (muscular dystrophy, Duchenne and Becker types) clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 63 3.4 up 2 0 2/0 3.4 1 35 3.40 3.40 M18533 M18533 Dystrophin DMD 3.4 3.40 up PTC;FVPTC FA;HN 14 21 publication 15240595 24 33 1443 1803 DPP4 dipeptidylpeptidase 4 (CD26, adenosine deaminase complexing protein 2) Gene_symbol_2_NCBI_Entrez 4 4 131 138.58 up 4 0 4/0 46.1933333333333 3 103 115.76 8.20 Dipeptidylpeptidase 4 (CD26, adenosine deaminase complexing protein 2) DPP4 6.855 115.76 up PTC Norm 16 16 publication 15735049 25 34 1548 1803 DPP4 dipeptidylpeptidase 4 (CD26, adenosine deaminase complexing protein 2) affy_probe_2_Entrez 4 4 131 138.58 up 4 0 4/0 46.1933333333333 3 103 115.76 8.20 203717_at 203717_at dipeptidylpeptidase 4 (CD26, adenosine deaminase complexing protein 2) DPP4 14.840 14.84 up 0.000763244 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1549 1803 DPP4 dipeptidylpeptidase 4 (CD26, adenosine deaminase complexing protein 2) affy_probe_2_Entrez 4 4 131 138.58 up 4 0 4/0 46.1933333333333 3 103 115.76 8.20 211478_s_at 211478_s_at dipeptidylpeptidase 4 (CD26, adenosine deaminase complexing protein 2) DPP4 14.622 14.62 up 0.002319596 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 3 6 123 1803 DPP4 dipeptidylpeptidase 4 (CD26, adenosine deaminase complexing protein 2) clone_accession_2_NCBI_rna_accession_2_Entrez 4 4 131 138.58 up 4 0 4/0 46.1933333333333 3 103 115.76 8.20 X60708 X60708 Liver dipeptidyl peptidase IV DPP4 8.2 8.20 up no 0.0005 PTC Norm 8 8 suppl. materials 11752453 4 8 324 1803 DPP4 dipeptidylpeptidase 4 (CD26, adenosine deaminase complexing protein 2) affy_probe_2_Entrez 4 4 131 138.58 up 4 0 4/0 46.1933333333333 3 103 115.76 8.20 34823_at 34823_at dipeptidylpeptidase 4 (CD26, adenosine deaminase complexing protein 2)_DPP4 DPP4 up PTC FTC;Norm 6 22 provided by authors 15337802 25 34 1757 1804 DPP6 dipeptidylpeptidase 6 affy_probe_2_Entrez 2 2 90 -9.34 down 2 0 0/2 -4.67 2 90 -3.10 -6.24 207789_s_at 207789_s_at dipeptidylpeptidase 6 DPP6 -6.244 -6.24 down 9.05227E-10 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 455 1804 DPP6 dipeptidylpeptidase 6 clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 90 -9.34 down 2 0 0/2 -4.67 2 90 -3.10 -6.24 M96860 M96860 Dipeptidyl aminopeptidase-like protein DPPX 3.1 -3.10 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1772 1805 DPT dermatopontin affy_probe_2_Entrez 2 2 71 -19.84 down 2 0 0/2 -9.92 2 71 -5.50 -14.34 207977_s_at 207977_s_at dermatopontin DPT -8.765 -8.76 down 9.01594E-06 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1774 1805 DPT dermatopontin affy_probe_2_Entrez 2 2 71 -19.84 down 2 0 0/2 -9.92 2 71 -5.50 -14.34 213068_at 213068_at dermatopontin DPT -9.365 -9.36 down 7.87215E-07 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1780 1805 DPT dermatopontin affy_probe_2_Entrez 2 2 71 -19.84 down 2 0 0/2 -9.92 2 71 -5.50 -14.34 213071_at 213071_at dermatopontin DPT -14.338 -14.34 down 1.24888E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 3 6 157 1805 DPT dermatopontin clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 71 -19.84 down 2 0 0/2 -9.92 2 71 -5.50 -14.34 Z22865 Z22865 Dermatopontin DPT -5.5 -5.50 down no 0.0003 PTC Norm 8 8 suppl. materials 11752453 7 12 530 1806 DPYD dihydropyrimidine dehydrogenase clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 2.1 up 1 0 1/0 2.1 1 35 2.10 2.10 U20938 U20938 Dihydrouracil dehydrogenase DPD 2.1 2.10 up PTC;FVPTC FA;HN 14 21 publication 15240595 14 21 972 1819 DRG2 developmentally regulated GTP binding protein 2 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 4.3 up 1 0 1/0 4.3 1 14 4.30 4.30 AA456291 AA456291 GTP-binding protein 4.3 4.30 up PTC Norm 7 7 publication 15041723 3 6 142 1843 DUSP1 dual specificity phosphatase 1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 16 -2.4 down 1 0 0/1 -2.4 1 16 -2.40 -2.40 X68277 X68277 CL 100 mRNA for protein tyrosine phosphatase DUSP1 -2.4 -2.40 down no 0.0058 PTC Norm 8 8 suppl. materials 11752453 25 34 1570 1846 DUSP4 dual specificity phosphatase 4 affy_probe_2_Entrez 2 2 90 9.56 up 2 0 2/0 4.78 2 90 4.86 4.70 204015_s_at 204015_s_at dual specificity phosphatase 4 DUSP4 5.873 5.87 up 5.22167E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1579 1846 DUSP4 dual specificity phosphatase 4 affy_probe_2_Entrez 2 2 90 9.56 up 2 0 2/0 4.78 2 90 4.86 4.70 204014_at 204014_at dual specificity phosphatase 4 DUSP4 4.861 4.86 up 0.001878589 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 424 1846 DUSP4 dual specificity phosphatase 4 clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 90 9.56 up 2 0 2/0 4.78 2 90 4.86 4.70 U48807 U48807 MAP kinase phosphatase MKP-2 4.7 4.70 up PTC;FVPTC FA;HN 14 21 publication 15240595 16 24 1203 1847 DUSP5 dual specificity phosphatase 5 Gene_symbol_2_NCBI_Entrez 3 3 126 9.25 up 3 0 3/0 4.625 2 98 5.20 4.05 DUSP5 4.051546392 4.05 up 0.01 PTC;FVPTC FA;HN 32 31 publication 15087409 4 8 358 1847 DUSP5 dual specificity phosphatase 5 affy_probe_2_Entrez 3 3 126 9.25 up 3 0 3/0 4.625 2 98 5.20 4.05 529_at 529_at dual specificity phosphatase 5_DUSP5 DUSP5 up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 421 1847 DUSP5 dual specificity phosphatase 5 clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 126 9.25 up 3 0 3/0 4.625 2 98 5.20 4.05 U15932 U15932 Dual specificity protein phosphatase HVH3 5.2 5.20 up PTC;FVPTC FA;HN 14 21 publication 15240595 24 33 1486 1848 DUSP6 dual specificity phosphatase 6 Gene_symbol_2_NCBI_Entrez 3 3 76 8.28 up 3 0 3/0 4.14 2 48 4.60 3.68 Dual specificity phosphatase 6 DUSP6 1.88 3.68 up PTC Norm 16 16 publication 15735049 3 6 132 1848 DUSP6 dual specificity phosphatase 6 clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 76 8.28 up 3 0 3/0 4.14 2 48 4.60 3.68 AB013382 AB013382 Dual specificity phosphatase 6 DUSP6 4.6 4.60 up no 0.0001 PTC Norm 8 8 suppl. materials 11752453 4 8 317 1848 DUSP6 dual specificity phosphatase 6 affy_probe_2_Entrez 3 3 76 8.28 up 3 0 3/0 4.14 2 48 4.60 3.68 41193_at 41193_at dual specificity phosphatase 6_DUSP6 DUSP6 up PTC FTC;Norm 6 22 provided by authors 15337802 19 32 1404 1893 ECM1 extracellular matrix protein 1 tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 up 1 0 1/0 0 0 0 0 0 ACTGCCCGCT ACTGCCCGCT extracellular matrix protein 1 (ECM1) up 0.0007 FVPTC Norm 1 1 publication 14715705 24 33 1495 1955 EGFL5 EGF-like-domain, multiple 5 Gene_symbol_2_NCBI_Entrez 2 2 60 2.66 up 2 0 2/0 2.66 1 32 2.66 2.66 Epidermal growth factor-like-domain, multiple 5 EGFL5 1.41 2.66 up PTC Norm 16 16 publication 15735049 4 8 337 1955 EGFL5 EGF-like-domain, multiple 5 affy_probe_2_Entrez 2 2 60 2.66 up 2 0 2/0 2.66 1 32 2.66 2.66 36488_at 36488_at EGF-like-domain, multiple 5_EGFL5 EGFL5 up PTC FTC;Norm 6 22 provided by authors 15337802 25 34 1744 1958 EGR1 early growth response 1 affy_probe_2_Entrez 1 1 55 -5.09 down 1 0 0/1 -5.09 1 55 -5.09 -5.09 201693_s_at 201693_s_at early growth response 1 EGR1 -5.088 -5.09 down 0.004189334 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1643 1983 EIF5 eukaryotic translation initiation factor 5 affy_probe_2_Entrez 1 1 55 -2.1 down 1 0 0/1 -2.1 1 55 -2.10 -2.10 208707_at 208707_at eukaryotic translation initiation factor 5 EIF5 -2.104 -2.10 down 0.003511325 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 16 24 1207 1999 ELF3 E74-like factor 3 (ets domain transcription factor, epithelial-specific ) Gene_symbol_2_NCBI_Entrez 1 1 63 1.77 up 1 0 1/0 1.77 1 63 1.77 1.77 ELF3 1.768292683 1.77 up 0.04 PTC;FVPTC FA;HN 32 31 publication 15087409 25 34 1691 2047 EPHB1 EPH receptor B1 affy_probe_2_Entrez 1 1 55 -2.95 down 1 0 0/1 -2.95 1 55 -2.95 -2.95 210753_s_at 210753_s_at --- --- -2.950 -2.95 down 2.50857E-07 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1488 2059 EPS8 epidermal growth factor receptor pathway substrate 8 Gene_symbol_2_NCBI_Entrez 5 5 166 13.51 up 5 0 5/0 3.3775 4 138 3.80 2.90 Epidermal growth factor receptor pathway substrate 8 EPS8 1.6 3.03 up PTC Norm 16 16 publication 15735049 25 34 1590 2059 EPS8 epidermal growth factor receptor pathway substrate 8 affy_probe_2_Entrez 5 5 166 13.51 up 5 0 5/0 3.3775 4 138 3.80 2.90 202609_at 202609_at epidermal growth factor receptor pathway substrate 8 EPS8 3.784 3.78 up 8.47516E-06 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 3 6 136 2059 EPS8 epidermal growth factor receptor pathway substrate 8 clone_accession_2_NCBI_rna_accession_2_Entrez 5 5 166 13.51 up 5 0 5/0 3.3775 4 138 3.80 2.90 U12535 U12535 Epidermal growth factor receptor kinase substrate 8 EPS8 3.8 3.80 up no 0.0001 PTC Norm 8 8 suppl. materials 11752453 4 8 356 2059 EPS8 epidermal growth factor receptor pathway substrate 8 affy_probe_2_Entrez 5 5 166 13.51 up 5 0 5/0 3.3775 4 138 3.80 2.90 1467_at 1467_at epidermal growth factor receptor pathway substrate 8_EPS8 EPS8 up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 462 2059 EPS8 epidermal growth factor receptor pathway substrate 8 clone_accession_2_NCBI_rna_accession_2_Entrez 5 5 166 13.51 up 5 0 5/0 3.3775 4 138 3.80 2.90 U12535 U12535 Epidermal growth factor receptor kinase substrate Eps8 2.9 2.90 up PTC;FVPTC FA;HN 14 21 publication 15240595 7 12 471 2065 ERBB3 v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 2.7 up 1 0 1/0 2.7 1 35 2.70 2.70 M34309 M34309 HER3 protein precursor HER3 2.7 2.70 up PTC;FVPTC FA;HN 14 21 publication 15240595 14 21 985 2071 ERCC3 excision repair cross-complementing rodent repair deficiency, complementation group 3 (xeroderma pigmentosum group B complementing) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 2.4 up 1 0 1/0 2.4 1 14 2.40 2.40 H20856 H20856 DNA repair helicase ERCC3 2.4 2.40 up PTC Norm 7 7 publication 15041723 25 34 1642 2104 ESRRG estrogen-related receptor gamma affy_probe_2_Entrez 1 1 55 -2.1 down 1 0 0/1 -2.1 1 55 -2.10 -2.10 209966_x_at 209966_x_at estrogen-related receptor gamma ESRRG -2.095 -2.10 down 0.000180269 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 509 2109 ETFB electron-transfer-flavoprotein, beta polypeptide clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.3 down 1 0 0/1 -2.3 1 35 -2.30 -2.30 X71129 X71129 Electron transfer flavoprotein beta-subunit ETFB 2.3 -2.30 down PTC;FVPTC FA;HN 14 21 publication 15240595 4 8 331 2115 ETV1 ets variant gene 1 affy_probe_2_Entrez 1 1 28 0 up 1 0 1/0 0 0 0 0 0 37156_at 37156_at hypothetical protein LOC221810_LOC221810 LOC221810 up PTC FTC;Norm 6 22 provided by authors 15337802 25 34 1585 2118 ETV4 ets variant gene 4 (E1A enhancer binding protein, E1AF) affy_probe_2_Entrez 1 1 55 4.23 up 1 0 1/0 4.23 1 55 4.23 4.23 211603_s_at 211603_s_at ets variant gene 4 (E1A enhancer binding protein, E1AF) /// ets variant gene 4 (E1A enhancer binding protein, E1AF) ETV4 4.226 4.23 up 0.008957754 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1489 2119 ETV5 ets variant gene 5 (ets-related molecule) Gene_symbol_2_NCBI_Entrez 2 2 87 7.36 up 2 0 2/0 3.68 2 87 4.38 2.98 Ets variant gene 5 (ets-related molecule) ETV5 1.575 2.98 up PTC Norm 16 16 publication 15735049 25 34 1582 2119 ETV5 ets variant gene 5 (ets-related molecule) affy_probe_2_Entrez 2 2 87 7.36 up 2 0 2/0 3.68 2 87 4.38 2.98 203349_s_at 203349_s_at ets variant gene 5 (ets-related molecule) ETV5 4.377 4.38 up 8.84969E-06 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1781 2167 FABP4 fatty acid binding protein 4, adipocyte affy_probe_2_Entrez 2 2 71 -20.76 down 2 0 0/2 -10.38 2 71 -5.40 -15.36 203980_at 203980_at fatty acid binding protein 4, adipocyte FABP4 -15.359 -15.36 down 0.010575236 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 3 6 156 2167 FABP4 fatty acid binding protein 4, adipocyte clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 71 -20.76 down 2 0 0/2 -10.38 2 71 -5.40 -15.36 AA128249 AA128249 Fatty acid binding protein 4 FABP4 -5.4 -5.40 down no 0.002 PTC Norm 8 8 suppl. materials 11752453 25 34 1743 2192 FBLN1 fibulin 1 affy_probe_2_Entrez 1 1 55 -5.06 down 1 0 0/1 -5.06 1 55 -5.06 -5.06 202995_s_at 202995_s_at fibulin 1 FBLN1 -5.058 -5.06 down 0.014030905 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 483 2202 EFEMP1 EGF-containing fibulin-like extracellular matrix protein 1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.6 down 1 0 0/1 -2.6 1 35 -2.60 -2.60 U03877 U03877 Fibrillin-like (S1-5) FBNL 2.6 -2.60 down PTC;FVPTC FA;HN 14 21 publication 15240595 12 19 844 2207 FCER1G Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 21 7.1 up 1 0 1/0 7.1 1 21 7.10 7.10 M33195 M33195 FCER1G 7.1 7.10 up PTC Norm 18 3 publication 12538453 7 12 454 2217 FCGRT Fc fragment of IgG, receptor, transporter, alpha clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -3.1 down 1 0 0/1 -3.1 1 35 -3.10 -3.10 U12255 U12255 Human IgG Fc receptor FCGRT 3.1 -3.10 down PTC;FVPTC FA;HN 14 21 publication 15240595 24 33 1521 2222 FDFT1 farnesyl-diphosphate farnesyltransferase 1 Gene_symbol_2_NCBI_Entrez 1 1 32 -1.44 down 1 0 0/1 -1.44 1 32 -1.44 -1.44 Farnesyl-diphosphate farnesyltransferase 1 FDFT1 -0.525 -1.44 down PTC Norm 16 16 publication 15735049 14 21 1009 2260 FGFR1 fibroblast growth factor receptor 1 (fms-related tyrosine kinase 2, Pfeiffer syndrome) Gene_symbol_2_NCBI_Entrez 1 1 14 0 up 1 0 1/0 0 0 0 0 0 bFGF receptor FGFR1 up PTC Norm 7 7 publication The gene name for this entry was determined manually from the description 15041723 7 12 537 2263 FGFR2 fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.1 down 1 0 0/1 -2.1 1 35 -2.10 -2.10 M87770 M87770 Fibroblast growth factor receptor K-sam-1 2.1 -2.10 down PTC;FVPTC FA;HN 14 21 publication 15240595 14 21 1010 2264 FGFR4 fibroblast growth factor receptor 4 Gene_symbol_2_NCBI_Entrez 1 1 14 0 up 1 0 1/0 0 0 0 0 0 FGF 4 receptor FGFR4 up PTC Norm 7 7 publication The gene name for this entry was determined manually from the description 15041723 7 12 495 2273 FHL1 four and a half LIM domains 1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.5 down 1 0 0/1 -2.5 1 35 -2.50 -2.50 AF063002 AF063002 Skeletal muscle LIM protein 1 SLIM1 2.5 -2.50 down PTC;FVPTC FA;HN 14 21 publication 15240595 7 12 508 2280 FKBP1A FK506 binding protein 1A, 12kDa clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.3 down 1 0 0/1 -2.3 1 35 -2.30 -2.30 M34539 M34539 FK506-binding protein FKBP12 2.3 -2.30 down PTC;FVPTC FA;HN 14 21 publication 15240595 24 33 1516 2314 FLII flightless I homolog (Drosophila) Gene_symbol_2_NCBI_Entrez 1 1 32 1.45 up 1 0 1/0 1.45 1 32 1.45 1.45 Flightless I homologue (Drosophila) FLII 0.54 1.45 up PTC Norm 16 16 publication 15735049 25 34 1645 2326 FMO1 flavin containing monooxygenase 1 affy_probe_2_Entrez 1 1 55 -2.12 down 1 0 0/1 -2.12 1 55 -2.12 -2.12 205666_at 205666_at flavin containing monooxygenase 1 FMO1 -2.121 -2.12 down 0.004172401 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1738 2331 FMOD fibromodulin affy_probe_2_Entrez 1 1 55 -4.82 down 1 0 0/1 -4.82 1 55 -4.82 -4.82 202709_at 202709_at fibromodulin FMOD -4.817 -4.82 down 1.09927E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 12 19 847 2335 FN1 fibronectin 1 clone_accession_2_NCBI_rna_accession_2_Entrez 5 5 132 32.79 up 5 0 5/0 8.1975 4 104 10.30 6.00 X02761 X02761 FN 6 6.00 up yes yes PTC Norm 18 3 publication 12538453 24 33 1462 2335 FN1 fibronectin 1 Gene_symbol_2_NCBI_Entrez 5 5 132 32.79 up 5 0 5/0 8.1975 4 104 10.30 6.00 Fibronectin 1 FN1 3.2 9.19 up PTC Norm 16 16 publication 15735049 3 6 119 2335 FN1 fibronectin 1 clone_accession_2_NCBI_rna_accession_2_Entrez 5 5 132 32.79 up 5 0 5/0 8.1975 4 104 10.30 6.00 X02761 X02761 Fibronectin 1 FN1 10.3 10.30 up yes 0.0002 PTC Norm 8 8 suppl. materials 11752453 4 8 310 2335 FN1 fibronectin 1 affy_probe_2_Entrez 5 5 132 32.79 up 5 0 5/0 8.1975 4 104 10.30 6.00 31720_s_at 31720_s_at fibronectin 1_FN1 FN1 up PTC FTC;Norm 6 22 provided by authors 15337802 4 8 338 2335 FN1 fibronectin 1 affy_probe_2_Entrez 5 5 132 32.79 up 5 0 5/0 8.1975 4 104 10.30 6.00 31719_at 31719_at fibronectin 1_FN1 FN1 up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 413 2335 FN1 fibronectin 1 clone_accession_2_NCBI_rna_accession_2_Entrez 5 5 132 32.79 up 5 0 5/0 8.1975 4 104 10.30 6.00 M10905 M10905 Fibronectin FN1 7.3 7.30 up PTC;FVPTC FA;HN 14 21 publication 15240595 3 6 153 2354 FOSB FBJ murine osteosarcoma viral oncogene homolog B clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 16 -4 down 1 0 0/1 -4 1 16 -4.00 -4.00 L49169 L49169 FOSB FOSB -4 -4.00 down yes 0.0047 PTC Norm 8 8 suppl. materials 11752453 25 34 1566 2582 GALE UDP-galactose-4-epimerase affy_probe_2_Entrez 1 1 55 7.01 up 1 0 1/0 7.01 1 55 7.01 7.01 202528_at 202528_at galactose-4-epimerase, UDP- GALE 7.006 7.01 up 2.90326E-07 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 17 28 1280 2597 GAPDH glyceraldehyde-3-phosphate dehydrogenase tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 down 1 0 0/1 0 0 0 0 0 TACCATCAAT TACCATCAAT down PTC ATC 1 1 publication 11076659 12 19 851 2617 GARS glycyl-tRNA synthetase clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 21 2.4 up 1 0 1/0 2.4 1 21 2.40 2.40 D30658 D30658 GARS 2.4 2.40 up PTC Norm 18 3 publication 12538453 3 6 147 2619 GAS1 growth arrest-specific 1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 16 -2.9 down 1 0 0/1 -2.9 1 16 -2.90 -2.90 L13698 L13698 Gas1 GAS1 -2.9 -2.90 down yes 0.0185 PTC Norm 8 8 suppl. materials 11752453 24 33 1538 2628 GATM glycine amidinotransferase (L-arginine:glycine amidinotransferase) Gene_symbol_2_NCBI_Entrez 1 1 32 -3.33 down 1 0 0/1 -3.33 1 32 -3.33 -3.33 Glycine amidinotransferase (L-arginine:glycine amidinotransferase) GATM -1.735 -3.33 down PTC Norm 16 16 publication 15735049 25 34 1717 2690 GHR growth hormone receptor affy_probe_2_Entrez 1 1 55 -3.6 down 1 0 0/1 -3.6 1 55 -3.60 -3.60 205498_at 205498_at growth hormone receptor GHR -3.605 -3.60 down 1.27617E-12 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1464 2707 GJB3 gap junction protein, beta 3, 31kDa (connexin 31) Gene_symbol_2_NCBI_Entrez 1 1 32 7.94 up 1 0 1/0 7.94 1 32 7.94 7.94 Gap junction protein, beta-3, 31 kDa (connexin 31) GJB3 2.99 7.94 up PTC Norm 16 16 publication 15735049 25 34 1700 2719 GPC3 glypican 3 affy_probe_2_Entrez 2 2 71 -6.65 down 2 0 0/2 -3.325 2 71 -3.15 -3.50 209220_at 209220_at glypican 3 GPC3 -3.145 -3.15 down 9.19624E-09 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 3 6 151 2719 GPC3 glypican 3 clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 71 -6.65 down 2 0 0/2 -3.325 2 71 -3.15 -3.50 U50410 U50410 Heparan sulphate proteoglycan (OCI5) GPC3 -3.5 -3.50 down no 0.0053 PTC Norm 8 8 suppl. materials 11752453 24 33 1487 2810 SFN stratifin Gene_symbol_2_NCBI_Entrez 1 1 32 3.15 up 1 0 1/0 3.15 1 32 3.15 3.15 Stratifin SFN 1.655 3.15 up PTC Norm 16 16 publication 15735049 25 34 1740 2823 GPM6A glycoprotein M6A affy_probe_2_Entrez 1 1 55 -7.34 down 1 0 0/1 -7.34 1 55 -7.34 -7.34 209470_s_at 209470_s_at glycoprotein M6A GPM6A -4.897 -4.90 down 4.17246E-07 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1767 2823 GPM6A glycoprotein M6A affy_probe_2_Entrez 1 1 55 -7.34 down 1 0 0/1 -7.34 1 55 -7.34 -7.34 209469_at 209469_at glycoprotein M6A GPM6A -7.337 -7.34 down 3.32241E-06 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 434 2920 CXCL2 chemokine (C-X-C motif) ligand 2 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 3.9 up 1 0 1/0 3.9 1 35 3.90 3.90 M36820 M36820 Human cytokine (GRO-beta) MIP2A 3.9 3.90 up PTC;FVPTC FA;HN 14 21 publication 15240595 7 12 466 2954 GSTZ1 glutathione transferase zeta 1 (maleylacetoacetate isomerase) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.9 down 1 0 0/1 -2.9 1 35 -2.90 -2.90 U86529 U86529 Glutathione transferase-zeta 1 GSTZ1 2.9 -2.90 down PTC;FVPTC FA;HN 14 21 publication 15240595 16 24 1208 2966 GTF2H2 general transcription factor IIH, polypeptide 2, 44kDa Gene_symbol_2_NCBI_Entrez 1 1 63 -1.46 down 1 0 0/1 -1.46 1 63 -1.46 -1.46 GTF2H2 0.683333333 -1.46 down 0.04 PTC;FVPTC FA;HN 32 31 publication 15087409 16 24 1206 2987 GUK1 guanylate kinase 1 Gene_symbol_2_NCBI_Entrez 1 1 63 1.79 up 1 0 1/0 1.79 1 63 1.79 1.79 GUK1 1.793103448 1.79 up 0.02 PTC;FVPTC FA;HN 32 31 publication 15087409 14 21 989 3014 H2AFX H2A histone family, member X clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 2.2 up 1 0 1/0 2.2 1 14 2.20 2.20 H95392 H95392 Histone H2A.X 2.2 2.20 up PTC Norm 7 7 publication 15041723 14 21 987 3021 H3F3B H3 histone, family 3B (H3.3B) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 2.3 up 1 0 1/0 2.3 1 14 2.30 2.30 AA608514 AA608514 Histone H3.3 2.3 2.30 up PTC Norm 7 7 publication 15041723 7 12 475 3028 HADH2 hydroxyacyl-Coenzyme A dehydrogenase, type II clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.7 down 1 0 0/1 -2.7 1 35 -2.70 -2.70 AF035555 AF035555 Endoplasmic reticulum-associated amyloid-beta-peptide-binding protein ERAB 2.7 -2.70 down PTC;FVPTC FA;HN 14 21 publication 15240595 12 19 856 3040 HBA2 hemoglobin, alpha 2 clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 69 -10.5 down 3 0 0/3 -3.5 3 69 -2.38 -4.72 V00491 V00491 Hemoglobin, alpha-chain (HBA1) 0.42 -2.38 down PTC Norm 18 3 publication 12538453 24 33 1542 3040 HBA2 hemoglobin, alpha 2 Gene_symbol_2_NCBI_Entrez 3 3 69 -10.5 down 3 0 0/3 -3.5 3 69 -2.38 -4.72 Hemoglobin, alpha2 HBA2 -2.24 -4.72 down PTC Norm 16 16 publication 15735049 3 6 150 3040 HBA2 hemoglobin, alpha 2 clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 69 -10.5 down 3 0 0/3 -3.5 3 69 -2.38 -4.72 J00153 J00153 Alpha globin HBA -3.4 -3.40 down no 0.0076 PTC Norm 8 8 suppl. materials 11752453 24 33 1539 3043 HBB hemoglobin, beta Gene_symbol_2_NCBI_Entrez 2 2 87 -15.16 down 2 0 0/2 -7.58 2 87 -3.77 -11.39 Hemoglobin, beta HBB -1.915 -3.77 down PTC Norm 16 16 publication 15735049 25 34 1768 3043 HBB hemoglobin, beta affy_probe_2_Entrez 2 2 87 -15.16 down 2 0 0/2 -7.58 2 87 -3.77 -11.39 211696_x_at 211696_x_at hemoglobin, beta /// hemoglobin, beta HBB -7.645 -7.64 down 0.039837845 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1775 3043 HBB hemoglobin, beta affy_probe_2_Entrez 2 2 87 -15.16 down 2 0 0/2 -7.58 2 87 -3.77 -11.39 217232_x_at 217232_x_at --- --- -9.853 -9.85 down 0.033878047 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1777 3043 HBB hemoglobin, beta affy_probe_2_Entrez 2 2 87 -15.16 down 2 0 0/2 -7.58 2 87 -3.77 -11.39 209116_x_at 209116_x_at hemoglobin, beta HBB -11.392 -11.39 down 0.039581121 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1708 3045 HBD hemoglobin, delta affy_probe_2_Entrez 1 1 55 -3.37 down 1 0 0/1 -3.37 1 55 -3.37 -3.37 206834_at 206834_at hemoglobin, delta HBD -3.371 -3.37 down 0.001258285 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 3 6 154 3081 HGD homogentisate 1,2-dioxygenase (homogentisate oxidase) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 16 -4.6 down 1 0 0/1 -4.6 1 16 -4.60 -4.60 AF000573 AF000573 Homogentisate 1,2-dioxygenase HGD -4.6 -4.60 down no 0.003 PTC Norm 8 8 suppl. materials 11752453 12 19 845 3091 HIF1A hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 21 6.6 up 1 0 1/0 6.6 1 21 6.60 6.60 U22431 U22431 HIF-1 6.6 6.60 up PTC Norm 18 3 publication 12538453 25 34 1632 3096 HIVEP1 human immunodeficiency virus type I enhancer binding protein 1 affy_probe_2_Entrez 1 1 55 2.12 up 1 0 1/0 2.12 1 55 2.12 2.12 204512_at 204512_at human immunodeficiency virus type I enhancer binding protein 1 HIVEP1 2.117 2.12 up 0.001786449 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 17 29 1292 3106 HLA-B major histocompatibility complex, class I, B tag_2_refseq_or_mgc_2_Entrez 1 2 4 0 up 2 0 2/0 0 0 0 0 0 CTGACCTGTG CTGACCTGTG up PTC FA 1 1 publication 11076659 17 30 1295 3106 HLA-B major histocompatibility complex, class I, B tag_2_refseq_or_mgc_2_Entrez 1 2 4 0 up 2 0 2/0 0 0 0 0 0 CTGACCTGTG CTGACCTGTG up PTC FTC 1 1 publication 11076659 12 19 848 3115 HLA-DPB1 major histocompatibility complex, class II, DP beta 1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 21 6 up 1 0 1/0 6 1 21 6.00 6.00 M83664 M83664 Major histocompatibility complex, class II, DP 1 (HLA-DPB1) 6 6.00 up PTC Norm 18 3 publication 12538453 7 12 529 3119 HLA-DQB1 major histocompatibility complex, class II, DQ beta 1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 2.1 up 1 0 1/0 2.1 1 35 2.10 2.10 M81141 M81141 MHC class II HLA-DQ-beta HLA-DQ- 2.1 2.10 up PTC;FVPTC FA;HN 14 21 publication 15240595 17 28 1283 3122 HLA-DRA major histocompatibility complex, class II, DR alpha tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 down 1 0 0/1 0 0 0 0 0 GGGCATCTCT GGGCATCTCT down PTC ATC 1 1 publication 11076659 10 16 713 3134 HLA-F major histocompatibility complex, class I, F affy_probe_2_Entrez 1 1 14 7.99 up 1 0 1/0 7.99 1 14 7.99 7.99 37420_i_at 37420_i_at Human leukocyte antigen F HLA-F 7.99 7.99 up yes PTC GT 8 6 publication 15515157 14 21 997 3162 HMOX1 heme oxygenase (decycling) 1 Gene_symbol_2_NCBI_Entrez 1 1 14 0 up 1 0 1/0 0 0 0 0 0 Heme oxygenase (decycling) 1 HMOX1 up PTC Norm 7 7 publication The gene name for this entry was determined manually from the description 15041723 14 21 984 3178 HNRPA1 heterogeneous nuclear ribonucleoprotein A1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 2.4 up 1 0 1/0 2.4 1 14 2.40 2.40 AA126911 AA126911 Heterogeneous nuclear ribonucleoprotein A1 2.4 2.40 up PTC Norm 7 7 publication 15041723 25 34 1634 3182 HNRPAB heterogeneous nuclear ribonucleoprotein A/B affy_probe_2_Entrez 1 1 55 2.03 up 1 0 1/0 2.03 1 55 2.03 2.03 201277_s_at 201277_s_at heterogeneous nuclear ribonucleoprotein A/B HNRPAB 2.026 2.03 up 0.000184196 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 4 8 372 3249 HPN hepsin (transmembrane protease, serine 1) affy_probe_2_Entrez 2 2 63 2.1 up 2 0 2/0 2.1 1 35 2.10 2.10 37639_at 37639_at hepsin (transmembrane protease, serine 1)_HPN HPN up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 531 3249 HPN hepsin (transmembrane protease, serine 1) clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 63 2.1 up 2 0 2/0 2.1 1 35 2.10 2.10 X07732 X07732 Serine protease hepsin TMPRSS1 2.1 2.10 up PTC;FVPTC FA;HN 14 21 publication 15240595 24 33 1519 3281 HSBP1 heat shock factor binding protein 1 Gene_symbol_2_NCBI_Entrez 1 1 32 -1.43 down 1 0 0/1 -1.43 1 32 -1.43 -1.43 Heat shock factor binding protein 1 HSBP1 -0.52 -1.43 down PTC Norm 16 16 publication 15735049 25 34 1638 3293 HSD17B3 hydroxysteroid (17-beta) dehydrogenase 3 affy_probe_2_Entrez 2 2 90 -4.54 down 2 0 0/2 -2.27 2 90 -2.04 -2.50 206985_at 206985_at hydroxysteroid (17-beta) dehydrogenase 3 HSD17B3 -2.037 -2.04 down 0.001096937 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 494 3293 HSD17B3 hydroxysteroid (17-beta) dehydrogenase 3 clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 90 -4.54 down 2 0 0/2 -2.27 2 90 -2.04 -2.50 U05659 U05659 17beta-Hydroxysteroid dehydrogenase type 3 EDH17B3 2.5 -2.50 down PTC;FVPTC FA;HN 14 21 publication 15240595 16 24 1222 3295 HSD17B4 hydroxysteroid (17-beta) dehydrogenase 4 Gene_symbol_2_NCBI_Entrez 1 1 63 -1.65 down 1 0 0/1 -1.65 1 63 -1.65 -1.65 HSD17B4 0.606896552 -1.65 down 0.03 PTC;FVPTC FA;HN 32 31 publication 15087409 7 12 411 3371 TNC tenascin C (hexabrachion) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 7.9 up 1 0 1/0 7.9 1 35 7.90 7.90 X78565 X78565 Tenascin-C TNC 7.9 7.90 up PTC;FVPTC FA;HN 14 21 publication 15240595 10 16 724 3397 ID1 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein affy_probe_2_Entrez 2 2 49 -6.21 down 2 0 0/2 -3.105 2 49 -3.00 -3.21 36617_at 36617_at Inhibitor of DNA binding 1, ID1 -2.51 -2.51 down yes PTC GT 8 6 publication 15515157 10 16 732 3397 ID1 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein affy_probe_2_Entrez 2 2 49 -6.21 down 2 0 0/2 -3.105 2 49 -3.00 -3.21 36618_g_at 36618_g_at Inhibitor of DNA binding 1, ID1 -3.21 -3.21 down yes PTC GT 8 6 publication 15515157 7 12 458 3397 ID1 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 49 -6.21 down 2 0 0/2 -3.105 2 49 -3.00 -3.21 X77956 X77956 Inhibitor of DNA binding 1 Idt 3 -3.00 down PTC;FVPTC FA;HN 14 21 publication 15240595 16 24 1245 3400 ID4 inhibitor of DNA binding 4, dominant negative helix-loop-helix protein Gene_symbol_2_NCBI_Entrez 1 1 63 -2.29 down 1 0 0/1 -2.29 1 63 -2.29 -2.29 ID4 0.436363636 -2.29 down 0.01 PTC;FVPTC FA;HN 32 31 publication 15087409 16 24 1232 3422 IDI1 isopentenyl-diphosphate delta isomerase 1 Gene_symbol_2_NCBI_Entrez 1 1 63 -1.85 down 1 0 0/1 -1.85 1 63 -1.85 -1.85 IDI1 0.540145985 -1.85 down 0.01 PTC;FVPTC FA;HN 32 31 publication 15087409 19 32 1406 3423 IDS iduronate 2-sulfatase (Hunter syndrome) tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 up 1 0 1/0 0 0 0 0 0 AGGACAAATA AGGACAAATA iduronate 2-sulfatase up 0.0245 FVPTC Norm 1 1 publication 14715705 14 21 1011 3480 IGF1R insulin-like growth factor 1 receptor Gene_symbol_2_NCBI_Entrez 1 1 14 0 up 1 0 1/0 0 0 0 0 0 Insulin-like growth factor 1 receptor IGF1R up PTC Norm 7 7 publication The gene name for this entry was determined manually from the description 15041723 25 34 1615 3482 IGF2R insulin-like growth factor 2 receptor affy_probe_2_Entrez 1 1 55 2.5 up 1 0 1/0 2.5 1 55 2.50 2.50 201393_s_at 201393_s_at insulin-like growth factor 2 receptor IGF2R 2.500 2.50 up 0.020340043 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 10 16 715 3488 IGFBP5 insulin-like growth factor binding protein 5 affy_probe_2_Entrez 2 2 42 5.96 up 2 0 2/0 5.96 1 14 5.96 5.96 38650_at 38650_at Insulin-like growth factor binding protein 5 IGFBP5 5.96 5.96 up no PTC GT 8 6 publication 15515157 4 8 315 3488 IGFBP5 insulin-like growth factor binding protein 5 affy_probe_2_Entrez 2 2 42 5.96 up 2 0 2/0 5.96 1 14 5.96 5.96 1396_at 1396_at insulin-like growth factor binding protein 5_IGFBP5 IGFBP5 up PTC FTC;Norm 6 22 provided by authors 15337802 4 8 319 3488 IGFBP5 insulin-like growth factor binding protein 5 affy_probe_2_Entrez 2 2 42 5.96 up 2 0 2/0 5.96 1 14 5.96 5.96 38650_at 38650_at insulin-like growth factor binding protein 5_IGFBP5 IGFBP5 up PTC FTC;Norm 6 22 provided by authors 15337802 4 8 320 3488 IGFBP5 insulin-like growth factor binding protein 5 affy_probe_2_Entrez 2 2 42 5.96 up 2 0 2/0 5.96 1 14 5.96 5.96 1678_g_at 1678_g_at insulin-like growth factor binding protein 5_IGFBP5 IGFBP5 up PTC FTC;Norm 6 22 provided by authors 15337802 4 8 308 3489 IGFBP6 insulin-like growth factor binding protein 6 affy_probe_2_Entrez 1 1 28 0 up 1 0 1/0 0 0 0 0 0 1736_at 1736_at insulin-like growth factor binding protein 6_IGFBP6 IGFBP6 up PTC FTC;Norm 6 22 provided by authors 15337802 12 19 858 3491 CYR61 cysteine-rich, angiogenic inducer, 61 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 21 -3.23 down 1 0 0/1 -3.23 1 21 -3.23 -3.23 AF031385 AF031385 Cystein-rich protein 61 (CYR61) 0.31 -3.23 down PTC Norm 18 3 publication 12538453 24 33 1450 3547 IGSF1 immunoglobulin superfamily, member 1 Gene_symbol_2_NCBI_Entrez 2 2 60 19.03 up 2 0 2/0 19.03 1 32 19.03 19.03 Immunoglobulin superfamily, member 1 IGSF1 4.25 19.03 up PTC Norm 16 16 publication 15735049 4 8 314 3547 IGSF1 immunoglobulin superfamily, member 1 affy_probe_2_Entrez 2 2 60 19.03 up 2 0 2/0 19.03 1 32 19.03 19.03 34238_at 34238_at immunoglobulin superfamily, member 1_IGSF1 IGSF1 up PTC FTC;Norm 6 22 provided by authors 15337802 4 8 360 3556 IL1RAP interleukin 1 receptor accessory protein affy_probe_2_Entrez 1 1 28 0 up 1 0 1/0 0 0 0 0 0 38546_at 38546_at interleukin 1 receptor accessory protein_IL1RAP IL1RAP up PTC FTC;Norm 6 22 provided by authors 15337802 24 33 1515 3597 IL13RA1 interleukin 13 receptor, alpha 1 Gene_symbol_2_NCBI_Entrez 2 2 87 3.8 up 2 0 2/0 1.9 2 87 2.32 1.48 Interleukin 13 receptor, alpha1 IL13RA1 0.565 1.48 up PTC Norm 16 16 publication 15735049 25 34 1621 3597 IL13RA1 interleukin 13 receptor, alpha 1 affy_probe_2_Entrez 2 2 87 3.8 up 2 0 2/0 1.9 2 87 2.32 1.48 201888_s_at 201888_s_at interleukin 13 receptor, alpha 1 IL13RA1 2.318 2.32 up 0.02057311 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 522 3613 IMPA2 inositol(myo)-1(or 4)-monophosphatase 2 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.2 down 1 0 0/1 -2.2 1 35 -2.20 -2.20 AF014398 AF014398 Myo-inositol monophosphatase 2 IMPA2 2.2 -2.20 down PTC;FVPTC FA;HN 14 21 publication 15240595 4 8 343 3625 INHBB inhibin, beta B (activin AB beta polypeptide) affy_probe_2_Entrez 1 1 28 0 up 1 0 1/0 0 0 0 0 0 38545_at 38545_at inhibin, beta B (activin AB beta polypeptide)_INHBB INHBB up PTC FTC;Norm 6 22 provided by authors 15337802 14 21 1017 3631 INPP4A inositol polyphosphate-4-phosphatase, type I, 107kDa Gene_symbol_2_NCBI_Synonym_2_Entrez 2 2 69 2.14 up 2 0 2/0 2.14 1 55 2.14 2.14 Inositol polyphosphate 4-phosphatase INPP4 up PTC Norm 7 7 publication The gene name for this entry was determined manually from the description 15041723 25 34 1629 3631 INPP4A inositol polyphosphate-4-phosphatase, type I, 107kDa affy_probe_2_Entrez 2 2 69 2.14 up 2 0 2/0 2.14 1 55 2.14 2.14 204552_at 204552_at inositol polyphosphate-4-phosphatase, type I, 107kDa INPP4A 2.142 2.14 up 0.001980641 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 14 21 1013 3636 INPPL1 inositol polyphosphate phosphatase-like 1 Gene_symbol_2_NCBI_Entrez 1 1 14 0 up 1 0 1/0 0 0 0 0 0 Inositol polyphosphate phosphatase-like protein 1 INPPL1 up PTC Norm 7 7 publication The gene name for this entry was determined manually from the description 15041723 3 6 145 3708 ITPR1 inositol 1,4,5-triphosphate receptor, type 1 clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 51 -5 down 2 0 0/2 -2.5 2 51 -2.30 -2.70 D26070 D26070 Type 1 inositol 1,4,5-trisphosphate receptor ITPR1 -2.7 -2.70 down yes 0.0013 PTC Norm 8 8 suppl. materials 11752453 7 12 514 3708 ITPR1 inositol 1,4,5-triphosphate receptor, type 1 clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 51 -5 down 2 0 0/2 -2.5 2 51 -2.30 -2.70 D26070 D26070 Type 1 inositol 1,4,5-trisphosphate receptor INSP3R1 2.3 -2.30 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1559 3759 KCNJ2 potassium inwardly-rectifying channel, subfamily J, member 2 affy_probe_2_Entrez 1 1 55 9.17 up 1 0 1/0 9.17 1 55 9.17 9.17 206765_at 206765_at potassium inwardly-rectifying channel, subfamily J, member 2 KCNJ2 9.173 9.17 up 0.018440032 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1659 3769 KCNJ13 potassium inwardly-rectifying channel, subfamily J, member 13 affy_probe_2_Entrez 1 1 55 -2.41 down 1 0 0/1 -2.41 1 55 -2.41 -2.41 210179_at 210179_at potassium inwardly-rectifying channel, subfamily J, member 13 KCNJ13 -2.408 -2.41 down 0.000155458 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 420 3783 KCNN4 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 5.3 up 1 0 1/0 5.3 1 35 5.30 5.30 AF022797 AF022797 Intermediate conductance calcium-activated potassium channel hSK4 5.3 5.30 up PTC;FVPTC FA;HN 14 21 publication 15240595 16 24 1248 3815 KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog Gene_symbol_2_NCBI_Entrez 2 2 118 -15.7 down 2 0 0/2 -7.85 2 118 -3.16 -12.54 KIT 0.316666667 -3.16 down yes 0.0001 PTC;FVPTC FA;HN 32 31 publication 15087409 25 34 1779 3815 KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog affy_probe_2_Entrez 2 2 118 -15.7 down 2 0 0/2 -7.85 2 118 -3.16 -12.54 205051_s_at 205051_s_at v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog KIT -12.543 -12.54 down 0.000130559 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1625 3838 KPNA2 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) affy_probe_2_Entrez 1 1 55 2.27 up 1 0 1/0 2.27 1 55 2.27 2.27 211762_s_at 211762_s_at karyopherin alpha 2 (RAG cohort 1, importin alpha 1) /// karyopherin alpha 2 (RAG cohort 1, importin alpha 1) KPNA2 2.267 2.27 up 0.02115598 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1461 3880 KRT19 keratin 19 Gene_symbol_2_NCBI_Entrez 3 3 83 20.35 up 3 0 3/0 6.78333333333333 3 83 9.35 4.70 Keratin 19 KRT19 3.225 9.35 up PTC Norm 16 16 publication 15735049 3 6 129 3880 KRT19 keratin 19 clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 83 20.35 up 3 0 3/0 6.78333333333333 3 83 9.35 4.70 Y00503 Y00503 Keratin 19 KRT19 6.3 6.30 up no 0.01 PTC Norm 8 8 suppl. materials 11752453 7 12 425 3880 KRT19 keratin 19 clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 83 20.35 up 3 0 3/0 6.78333333333333 3 83 9.35 4.70 Y00503 Y00503 Keratin 19 KRT19 4.7 4.70 up PTC;FVPTC FA;HN 14 21 publication 15240595 7 12 415 3891 KRTHB5 keratin, hair, basic, 5 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -7.3 down 1 0 0/1 -7.3 1 35 -7.30 -7.30 X99140 X99140 Hair keratin hHb5 7.3 -7.30 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1669 3908 LAMA2 laminin, alpha 2 (merosin, congenital muscular dystrophy) affy_probe_2_Entrez 1 1 55 -2.56 down 1 0 0/1 -2.56 1 55 -2.56 -2.56 216840_s_at 216840_s_at laminin, alpha 2 (merosin, congenital muscular dystrophy) LAMA2 -2.558 -2.56 down 0.040376953 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1457 3914 LAMB3 laminin, beta 3 Gene_symbol_2_NCBI_Entrez 2 2 60 12.95 up 2 0 2/0 12.95 1 32 12.95 12.95 Laminin, beta3 LAMB3 3.695 12.95 up PTC Norm 16 16 publication 15735049 4 8 367 3914 LAMB3 laminin, beta 3 affy_probe_2_Entrez 2 2 60 12.95 up 2 0 2/0 12.95 1 32 12.95 12.95 36929_at 36929_at laminin, beta 3_LAMB3 LAMB3 up PTC FTC;Norm 6 22 provided by authors 15337802 24 33 1467 3934 LCN2 lipocalin 2 (oncogene 24p3) Gene_symbol_2_NCBI_Entrez 1 1 32 6.96 up 1 0 1/0 6.96 1 32 6.96 6.96 Lipocalin 2 (oncogene 24p3) LCN2 2.8 6.96 up PTC Norm 16 16 publication 15735049 12 19 846 3939 LDHA lactate dehydrogenase A clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 21 6.3 up 1 0 1/0 6.3 1 21 6.30 6.30 X02152 X02152 LDH-A 6.3 6.30 up PTC Norm 18 3 publication 12538453 4 8 348 3956 LGALS1 lectin, galactoside-binding, soluble, 1 (galectin 1) affy_probe_2_Entrez 1 1 28 0 up 1 0 1/0 0 0 0 0 0 33412_at 33412_at lectin, galactoside-binding, soluble, 1 (galectin 1)_LGALS1 LGALS1 up PTC FTC;Norm 6 22 provided by authors 15337802 24 33 1484 3958 LGALS3 lectin, galactoside-binding, soluble, 3 (galectin 3) Gene_symbol_2_NCBI_Entrez 3 3 83 12 up 3 0 3/0 4 3 83 4.40 3.80 Lectin, galactoside-binding, soluble, 3 (galectin 3) LGALS3 1.925 3.80 up PTC Norm 16 16 publication 15735049 3 6 135 3958 LGALS3 lectin, galactoside-binding, soluble, 3 (galectin 3) clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 83 12 up 3 0 3/0 4 3 83 4.40 3.80 AB006780 AB006780 Galectin-3 LGALS3 3.8 3.80 up no 0.0001 PTC Norm 8 8 suppl. materials 11752453 7 12 428 3958 LGALS3 lectin, galactoside-binding, soluble, 3 (galectin 3) clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 83 12 up 3 0 3/0 4 3 83 4.40 3.80 AB006780 AB006780 Galectin-3 GALBP 4.4 4.40 up PTC;FVPTC FA;HN 14 21 publication 15240595 7 12 510 3977 LIFR leukemia inhibitory factor receptor clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.3 down 1 0 0/1 -2.3 1 35 -2.30 -2.30 X61615 X61615 Leukemia inhibitory factor receptor LIFR 2.3 -2.30 down PTC;FVPTC FA;HN 14 21 publication 15240595 7 12 539 4036 LRP2 low density lipoprotein-related protein 2 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.1 down 1 0 0/1 -2.1 1 35 -2.10 -2.10 U33837 U33837 Megalin GP330 2.1 -2.10 down PTC;FVPTC FA;HN 14 21 publication 15240595 24 33 1449 4038 LRP4 low density lipoprotein receptor-related protein 4 Gene_symbol_2_NCBI_Entrez 4 4 150 45.62 up 4 0 4/0 15.2066666666667 3 122 19.43 8.60 Low density lipoprotein receptor-related protein 4 LRP4 4.28 19.43 up PTC Norm 16 16 publication 15735049 25 34 1547 4038 LRP4 low density lipoprotein receptor-related protein 4 affy_probe_2_Entrez 4 4 150 45.62 up 4 0 4/0 15.2066666666667 3 122 19.43 8.60 212850_s_at 212850_s_at low density lipoprotein receptor-related protein 4 LRP4 17.590 17.59 up 4.36232E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 4 8 307 4038 LRP4 low density lipoprotein receptor-related protein 4 affy_probe_2_Entrez 4 4 150 45.62 up 4 0 4/0 15.2066666666667 3 122 19.43 8.60 36059_at 36059_at low density lipoprotein receptor-related protein 4_LRP4 LRP4 up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 410 4038 LRP4 low density lipoprotein receptor-related protein 4 clone_accession_2_NCBI_rna_accession_2_Entrez 4 4 150 45.62 up 4 0 4/0 15.2066666666667 3 122 19.43 8.60 AB011540 AB011540 Similar to LDL receptor-like protein: tSXV motif MEGF7 8.6 8.60 up PTC;FVPTC FA;HN 14 21 publication 15240595 14 21 967 4067 LYN v-yes-1 Yamaguchi sarcoma viral related oncogene homolog clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 62 up 1 0 1/0 62 1 14 62.00 62.00 R83837 R83837 V-yes-1 Yamaguchi sarcoma viral related oncogene 62 62.00 up PTC Norm 7 7 publication 15041723 3 6 121 4068 SH2D1A SH2 domain protein 1A, Duncan's disease (lymphoproliferative syndrome) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 16 8.7 up 1 0 1/0 8.7 1 16 8.70 8.70 AL022718 AL022718 Odz (odd Oz/ten-m, Drosophila ) 1 ODZ1 8.7 8.70 up yes 0.0001 PTC Norm 8 8 suppl. materials 11752453 4 8 312 4070 TACSTD2 tumor-associated calcium signal transducer 2 affy_probe_2_Entrez 2 2 63 11.4 up 2 0 2/0 11.4 1 35 11.40 11.40 41286_at 41286_at tumor-associated calcium signal transducer 2_TACSTD2 TACSTD2 up PTC FTC;Norm 6 22 provided by authors 15337802 4 8 323 4070 TACSTD2 tumor-associated calcium signal transducer 2 affy_probe_2_Entrez 2 2 63 11.4 up 2 0 2/0 11.4 1 35 11.40 11.40 291_s_at 291_s_at tumor-associated calcium signal transducer 2_TACSTD2 TACSTD2 up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 409 4070 TACSTD2 tumor-associated calcium signal transducer 2 clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 63 11.4 up 2 0 2/0 11.4 1 35 11.40 11.40 J04152 J04152 GA733-1 protein precursor TROP2 11.4 11.40 up yes PTC;FVPTC FA;HN 14 21 publication 15240595 4 8 336 4071 TM4SF1 transmembrane 4 L six family member 1 affy_probe_2_Entrez 1 1 28 0 up 1 0 1/0 0 0 0 0 0 41531_at 41531_at transmembrane 4 superfamily member 1_TM4SF1 TM4SF1 up PTC FTC;Norm 6 22 provided by authors 15337802 4 8 354 4071 TM4SF1 transmembrane 4 L six family member 1 affy_probe_2_Entrez 1 1 28 0 up 1 0 1/0 0 0 0 0 0 892_at 892_at transmembrane 4 superfamily member 1_TM4SF1 TM4SF1 up PTC FTC;Norm 6 22 provided by authors 15337802 25 34 1656 4086 SMAD1 SMAD, mothers against DPP homolog 1 (Drosophila) affy_probe_2_Entrez 1 1 55 -2.24 down 1 0 0/1 -2.24 1 55 -2.24 -2.24 210993_s_at 210993_s_at SMAD, mothers against DPP homolog 1 (Drosophila) SMAD1 -2.242 -2.24 down 0.002998803 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 12 19 857 4089 SMAD4 SMAD, mothers against DPP homolog 4 (Drosophila) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 21 -3.03 down 1 0 0/1 -3.03 1 21 -3.03 -3.03 U44378 U44378 Homozygous deletion target in pancreatic carcinoma (DPC4/SMAD4) 0.33 -3.03 down PTC Norm 18 3 publication 12538453 2 4 100 4090 SMAD5 SMAD, mothers against DPP homolog 5 (Drosophila) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 2 -7 down 1 0 0/1 -7 1 2 -7.00 -7.00 NM_005903 NM_005903 MAD, mothers against decapentaplegic homologue 5 MADH5 7 -7.00 down PCL Norm 1 1 publication 15785240 19 32 1412 4123 MAN2C1 mannosidase, alpha, class 2C, member 1 tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 up 1 0 1/0 0 0 0 0 0 AGGCCCACAA AGGCCCACAA mannosidase, alpha2C up 0.0029 FVPTC Norm 1 1 publication 14715705 25 34 1765 4147 MATN2 matrilin 2 affy_probe_2_Entrez 2 2 90 -10.56 down 2 0 0/2 -5.28 2 90 -3.50 -7.06 202350_s_at 202350_s_at matrilin 2 MATN2 -7.062 -7.06 down 0.002361334 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 442 4147 MATN2 matrilin 2 clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 90 -10.56 down 2 0 0/2 -5.28 2 90 -3.50 -7.06 U69263 U69263 Matrilin-2 precursor MATN2 3.5 -3.50 down PTC;FVPTC FA;HN 14 21 publication 15240595 3 6 141 4223 MEOX2 mesenchyme homeo box 2 (growth arrest-specific homeo box) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 16 -2.4 down 1 0 0/1 -2.4 1 16 -2.40 -2.40 AI743406 AI743406 Growth arrest-specific homeo box MEOX2 -2.4 -2.40 down no 0.0082 PTC Norm 8 8 suppl. materials 11752453 12 19 861 4233 MET met proto-oncogene (hepatocyte growth factor receptor) clone_accession_2_NCBI_rna_accession_2_Entrez 5 5 159 18.28 up 5 0 5/0 4.57 4 138 6.60 2.70 J02958 J02958 Hepatocyte growth factor receptor (c-MET) up yes PTC Norm 18 3 publication 12538453 24 33 1493 4233 MET met proto-oncogene (hepatocyte growth factor receptor) Gene_symbol_2_NCBI_Entrez 5 5 159 18.28 up 5 0 5/0 4.57 4 138 6.60 2.70 Met proto-oncogene (hepatocyte growth factor receptor) MET 1.47 2.77 up PTC Norm 16 16 publication 15735049 25 34 1569 4233 MET met proto-oncogene (hepatocyte growth factor receptor) affy_probe_2_Entrez 5 5 159 18.28 up 5 0 5/0 4.57 4 138 6.60 2.70 203510_at 203510_at met proto-oncogene (hepatocyte growth factor receptor) MET 6.213 6.21 up 0.011209368 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 3 6 127 4233 MET met proto-oncogene (hepatocyte growth factor receptor) Gene_symbol_2_NCBI_Entrez 5 5 159 18.28 up 5 0 5/0 4.57 4 138 6.60 2.70 Met protooncogene MET 6.6 6.60 up no 0.0001 PTC Norm 8 8 suppl. materials 11752453 7 12 470 4233 MET met proto-oncogene (hepatocyte growth factor receptor) clone_accession_2_NCBI_rna_accession_2_Entrez 5 5 159 18.28 up 5 0 5/0 4.57 4 138 6.60 2.70 J02958 J02958 MET protooncogene protein HGFR 2.7 2.70 up PTC;FVPTC FA;HN 14 21 publication 15240595 4 8 346 4240 MFGE8 milk fat globule-EGF factor 8 protein affy_probe_2_Entrez 2 2 63 3 up 2 0 2/0 3 1 35 3.00 3.00 34403_at 34403_at milk fat globule-EGF factor 8 protein_MFGE8 MFGE8 up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 457 4240 MFGE8 milk fat globule-EGF factor 8 protein clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 63 3 up 2 0 2/0 3 1 35 3.00 3.00 U58516 U58516 Breast epithelial antigen 46 BA46 3 3.00 up PTC;FVPTC FA;HN 14 21 publication 15240595 24 33 1531 4291 MLF1 myeloid leukemia factor 1 Gene_symbol_2_NCBI_Entrez 2 2 87 -4.99 down 2 0 0/2 -2.495 2 87 -2.20 -2.79 Myeloid leukemia factor 1 MLF1 -1.135 -2.20 down PTC Norm 16 16 publication 15735049 25 34 1679 4291 MLF1 myeloid leukemia factor 1 affy_probe_2_Entrez 2 2 87 -4.99 down 2 0 0/2 -2.495 2 87 -2.20 -2.79 204783_at 204783_at myeloid leukemia factor 1 MLF1 -2.748 -2.75 down 0.018119122 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1681 4291 MLF1 myeloid leukemia factor 1 affy_probe_2_Entrez 2 2 87 -4.99 down 2 0 0/2 -2.495 2 87 -2.20 -2.79 204784_s_at 204784_s_at myeloid leukemia factor 1 MLF1 -2.787 -2.79 down 0.008676001 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1666 4300 MLLT3 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 affy_probe_2_Entrez 1 1 55 -2.51 down 1 0 0/1 -2.51 1 55 -2.51 -2.51 204917_s_at 204917_s_at myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 MLLT3 -2.510 -2.51 down 0.043508956 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 12 19 862 4320 MMP11 matrix metalloproteinase 11 (stromelysin 3) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 21 0 up 1 0 1/0 0 0 0 0 0 X57766 X57766 MMP-11 up yes PTC Norm 18 3 publication 12538453 7 12 484 4324 MMP15 matrix metalloproteinase 15 (membrane-inserted) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.6 down 1 0 0/1 -2.6 1 35 -2.60 -2.60 Z48482 Z48482 Membrane-type matrix metalloproteinase 2 MT2-MMP 2.6 -2.60 down PTC;FVPTC FA;HN 14 21 publication 15240595 24 33 1446 4435 CITED1 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 Gene_symbol_2_NCBI_Entrez 3 3 83 54.61 up 3 0 3/0 18.2033333333333 3 83 26.90 6.30 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxyl-terminal domain, 1 CITED1 4.42 21.41 up PTC Norm 16 16 publication 15735049 3 6 115 4435 CITED1 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 83 54.61 up 3 0 3/0 18.2033333333333 3 83 26.90 6.30 U65092 U65092 Cbp/p300-interacting transactivator 1 CITED1 26.9 26.90 up yes 0.0005 PTC Norm 8 8 suppl. materials 11752453 7 12 417 4435 CITED1 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 83 54.61 up 3 0 3/0 18.2033333333333 3 83 26.90 6.30 U65092 U65092 Melanocyte-specific gene 1 MSG1 6.3 6.30 up PTC;FVPTC FA;HN 14 21 publication 15240595 10 16 723 4489 MT1A metallothionein 1A (functional) affy_probe_2_Entrez 2 2 49 -4.79 down 2 0 0/2 -2.395 2 49 -2.39 -2.40 31623_f_at 31623_f_at Metallothionein A MT1A -2.39 -2.39 down yes PTC GT 8 6 publication 15515157 7 12 463 4489 MT1A metallothionein 1A (functional) clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 49 -4.79 down 2 0 0/2 -2.395 2 49 -2.39 -2.40 K01383 K01383 Metallothionein-1A MT1 2.9 -2.90 down PTC;FVPTC FA;HN 14 21 publication 15240595 7 12 501 4489 MT1A metallothionein 1A (functional) clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 49 -4.79 down 2 0 0/2 -2.395 2 49 -2.39 -2.40 M13485 M13485 Metallothionein 1B MTI 2.4 -2.40 down PTC;FVPTC FA;HN 14 21 publication 15240595 10 16 722 4493 MT1E metallothionein 1E (functional) affy_probe_2_Entrez 2 2 49 -4.69 down 2 0 0/2 -2.345 2 49 -2.29 -2.40 36130_f_at 36130_f_at Similar to RNA helicase-related protein MT1E -2.29 -2.29 down yes PTC GT 8 6 publication 15515157 7 12 500 4493 MT1E metallothionein 1E (functional) clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 49 -4.69 down 2 0 0/2 -2.345 2 49 -2.29 -2.40 R92331 R92331 Human metallothionein 1E MTIE 2.4 -2.40 down PTC;FVPTC FA;HN 14 21 publication 15240595 10 16 730 4494 MT1F metallothionein 1F (functional) affy_probe_2_Entrez 2 2 49 -6.31 down 2 0 0/2 -3.155 2 49 -2.91 -3.40 31622_f_at 31622_f_at Metallothionein 1F MT1F -2.91 -2.91 down yes PTC GT 8 6 publication 15515157 7 12 445 4494 MT1F metallothionein 1F (functional) clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 49 -6.31 down 2 0 0/2 -3.155 2 49 -2.91 -3.40 M10943 M10943 Human metallothionein-9f MT1 3.4 -3.40 down PTC;FVPTC FA;HN 14 21 publication 15240595 10 16 742 4495 MT1G metallothionein 1G affy_probe_2_Entrez 3 3 65 -17.15 down 3 0 0/3 -5.71666666666667 3 65 -2.80 -8.60 926_at 926_at Metallothionein IG MT-IG -5.75 -5.75 down yes PTC GT 8 6 publication 15515157 3 6 162 4495 MT1G metallothionein 1G clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 65 -17.15 down 3 0 0/3 -5.71666666666667 3 65 -2.80 -8.60 J03910 J03910 Metallothionein-IG MT1G -8.6 -8.60 down no 0.0023 PTC Norm 8 8 suppl. materials 11752453 7 12 467 4495 MT1G metallothionein 1G clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 65 -17.15 down 3 0 0/3 -5.71666666666667 3 65 -2.80 -8.60 J03910 J03910 Metallothionein IG MT1 2.8 -2.80 down PTC;FVPTC FA;HN 14 21 publication 15240595 10 16 726 4496 MT1H metallothionein 1H affy_probe_2_Entrez 1 1 14 -2.57 down 1 0 0/1 -2.57 1 14 -2.57 -2.57 39594_f_at 39594_f_at Metallothionein 1H MT1H -2.57 -2.57 down yes PTC GT 8 6 publication 15515157 7 12 469 4504 MT3 metallothionein 3 (growth inhibitory factor (neurotrophic)) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.8 down 1 0 0/1 -2.8 1 35 -2.80 -2.80 M93311 M93311 Metallothionein III GIFB 2.8 -2.80 down PTC;FVPTC FA;HN 14 21 publication 15240595 24 33 1494 4628 MYH10 myosin, heavy polypeptide 10, non-muscle Gene_symbol_2_NCBI_Entrez 2 2 60 2.72 up 2 0 2/0 2.72 1 32 2.72 2.72 Myosin, heavy polypeptide 10, nonmuscle MYH10 1.445 2.72 up PTC Norm 16 16 publication 15735049 4 8 359 4628 MYH10 myosin, heavy polypeptide 10, non-muscle affy_probe_2_Entrez 2 2 60 2.72 up 2 0 2/0 2.72 1 32 2.72 2.72 32838_at 32838_at myosin, heavy polypeptide 10, non-muscle_MYH10 MYH10 up PTC FTC;Norm 6 22 provided by authors 15337802 25 34 1563 4646 MYO6 myosin VI affy_probe_2_Entrez 1 1 55 7.87 up 1 0 1/0 7.87 1 55 7.87 7.87 210480_s_at 210480_s_at myosin VI MYO6 7.867 7.87 up 0.005460828 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1683 4653 MYOC myocilin, trabecular meshwork inducible glucocorticoid response affy_probe_2_Entrez 1 1 55 -2.86 down 1 0 0/1 -2.86 1 55 -2.86 -2.86 210155_at 210155_at myocilin, trabecular meshwork inducible glucocorticoid response MYOC -2.863 -2.86 down 0.000503961 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1749 4684 NCAM1 neural cell adhesion molecule 1 affy_probe_2_Entrez 1 1 55 -5.61 down 1 0 0/1 -5.61 1 55 -5.61 -5.61 212843_at 212843_at neural cell adhesion molecule 1 NCAM1 -5.608 -5.61 down 0.027099522 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 4 8 313 4753 NELL2 NEL-like 2 (chicken) affy_probe_2_Entrez 2 2 63 4.9 up 2 0 2/0 4.9 1 35 4.90 4.90 32598_at 32598_at NEL-like 2 (chicken)_NELL2 NELL2 up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 423 4753 NELL2 NEL-like 2 (chicken) clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 63 4.9 up 2 0 2/0 4.9 1 35 4.90 4.90 D83018 D83018 NRP-2 NRP2 4.9 4.90 up yes PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1701 4856 NOV nephroblastoma overexpressed gene affy_probe_2_Entrez 1 1 55 -3.15 down 1 0 0/1 -3.15 1 55 -3.15 -3.15 214321_at 214321_at nephroblastoma overexpressed gene NOV -3.152 -3.15 down 0.026812738 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1483 4897 NRCAM neuronal cell adhesion molecule Gene_symbol_2_NCBI_Entrez 2 2 87 8.65 up 2 0 2/0 4.325 2 87 4.79 3.86 Neuronal cell adhesion molecule NRCAM 1.95 3.86 up PTC Norm 16 16 publication 15735049 25 34 1580 4897 NRCAM neuronal cell adhesion molecule affy_probe_2_Entrez 2 2 87 8.65 up 2 0 2/0 4.325 2 87 4.79 3.86 204105_s_at 204105_s_at neuronal cell adhesion molecule NRCAM 4.795 4.79 up 4.95381E-08 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 19 32 1402 4907 NT5E 5'-nucleotidase, ecto (CD73) tag_2_refseq_or_mgc_2_Entrez 2 2 30 0 up 2 0 2/0 0 0 0 0 0 AGCCTGCTCA AGCCTGCTCA CD73 (5'nucleotidase) up 0.0245 FVPTC Norm 1 1 publication 14715705 4 8 332 4907 NT5E 5'-nucleotidase, ecto (CD73) affy_probe_2_Entrez 2 2 30 0 up 2 0 2/0 0 0 0 0 0 31886_at 31886_at 5'-nucleotidase, ecto (CD73)_NT5E NT5E up PTC FTC;Norm 6 22 provided by authors 15337802 14 21 973 4929 NR4A2 nuclear receptor subfamily 4, group A, member 2 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 3.6 up 1 0 1/0 3.6 1 14 3.60 3.60 AA598611 AA598611 Immediate-early response protein 3.6 3.60 up PTC Norm 7 7 publication 15041723 25 34 1741 4948 OCA2 oculocutaneous albinism II (pink-eye dilution homolog, mouse) affy_probe_2_Entrez 1 1 55 -4.99 down 1 0 0/1 -4.99 1 55 -4.99 -4.99 206498_at 206498_at oculocutaneous albinism II (pink-eye dilution homolog, mouse) OCA2 -4.995 -4.99 down 0.014316043 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1675 4969 OGN osteoglycin (osteoinductive factor, mimecan) affy_probe_2_Entrez 1 1 55 -2.68 down 1 0 0/1 -2.68 1 55 -2.68 -2.68 218730_s_at 218730_s_at osteoglycin (osteoinductive factor, mimecan) OGN -2.683 -2.68 down 0.023495586 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 14 21 986 5036 PA2G4 proliferation-associated 2G4, 38kDa clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 2.4 up 1 0 1/0 2.4 1 14 2.40 2.40 AA488332 AA488332 Cell cycle protein p38-2G4 2.4 2.40 up PTC Norm 7 7 publication 15041723 16 24 1220 5052 PRDX1 peroxiredoxin 1 Gene_symbol_2_NCBI_Entrez 1 1 63 -1.62 down 1 0 0/1 -1.62 1 63 -1.62 -1.62 PRDX1 0.617647059 -1.62 down 0.02 PTC;FVPTC FA;HN 32 31 publication 15087409 24 33 1512 5066 PAM peptidylglycine alpha-amidating monooxygenase Gene_symbol_2_NCBI_Entrez 1 1 32 1.69 up 1 0 1/0 1.69 1 32 1.69 1.69 Peptidylglycine alpha-amidating monooxygenase PAM 0.755 1.69 up PTC Norm 16 16 publication 15735049 14 21 992 5154 PDGFA platelet-derived growth factor alpha polypeptide clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 2 up 1 0 1/0 2 1 14 2.00 2.00 AA701502 AA701502 Platelet-derived growth factor PDGF-A 2 2.00 up PTC Norm 7 7 publication 15041723 7 12 481 5178 PEG3 paternally expressed 3 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.6 down 1 0 0/1 -2.6 1 35 -2.60 -2.60 AB006625 AB006625 Human homolog of a mouse imprinted gene, Peg3 KIAA0287 2.6 -2.60 down PTC;FVPTC FA;HN 14 21 publication 15240595 7 12 515 5222 PGA5 pepsinogen 5, group I (pepsinogen A) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.3 down 1 0 0/1 -2.3 1 35 -2.30 -2.30 J00287 J00287 Pepsinogen PEP 2.3 -2.30 down PTC;FVPTC FA;HN 14 21 publication 15240595 7 12 526 5226 PGD phosphogluconate dehydrogenase clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.2 down 1 0 0/1 -2.2 1 35 -2.20 -2.20 U30255 U30255 Human phosphogluconate dehydrogenase hPGDH 2.2 -2.20 down PTC;FVPTC FA;HN 14 21 publication 15240595 14 21 1004 5228 PGF placental growth factor, vascular endothelial growth factor-related protein Gene_symbol_2_NCBI_Entrez 1 1 14 0 up 1 0 1/0 0 0 0 0 0 placental growth factor PGF up PTC Norm 7 7 publication The gene name for this entry was determined manually from the description 15041723 10 16 709 5265 SERPINA1 serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 affy_probe_2_Entrez 6 7 196 96.94 up 7 0 7/0 16.1566666666667 6 168 27.64 6.90 36781_at 36781_at Serine (or cysteine) proteinase inhibitor SERPIN-A1 16.51 16.51 up yes PTC GT 8 6 publication 15515157 10 17 747 5265 SERPINA1 serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 affy_probe_2_Entrez 6 7 196 96.94 up 7 0 7/0 16.1566666666667 6 168 27.64 6.90 36781_at 36781_at Serine (or cysteine) proteinase inhibitor, clade A SERPIN-A1 11.35 11.35 up yes yes PTC Norm 8 8 publication 15515157 24 33 1447 5265 SERPINA1 serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 Gene_symbol_2_NCBI_Entrez 6 7 196 96.94 up 7 0 7/0 16.1566666666667 6 168 27.64 6.90 Serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 SERPINA1 4.395 21.04 up PTC Norm 16 16 publication 15735049 25 34 1546 5265 SERPINA1 serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 affy_probe_2_Entrez 6 7 196 96.94 up 7 0 7/0 16.1566666666667 6 168 27.64 6.90 202833_s_at 202833_s_at serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 SERPINA1 27.636 27.64 up 0.009800013 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 3 6 117 5265 SERPINA1 serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 clone_accession_2_NCBI_rna_accession_2_Entrez 6 7 196 96.94 up 7 0 7/0 16.1566666666667 6 168 27.64 6.90 X01683 X01683 Alpha 1-antitrypsin SERPINA1 13.5 13.50 up no 0.002 PTC Norm 8 8 suppl. materials 11752453 4 8 334 5265 SERPINA1 serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 affy_probe_2_Entrez 6 7 196 96.94 up 7 0 7/0 16.1566666666667 6 168 27.64 6.90 36781_at 36781_at serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1_SERPINA1 SERPINA1 up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 416 5265 SERPINA1 serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 clone_accession_2_NCBI_rna_accession_2_Entrez 6 7 196 96.94 up 7 0 7/0 16.1566666666667 6 168 27.64 6.90 X01683 X01683 alpha 1-Antitrypsin AAT 6.9 6.90 up PTC;FVPTC FA;HN 14 21 publication 15240595 12 19 859 5310 PKD1 polycystic kidney disease 1 (autosomal dominant) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 21 -3.57 down 1 0 0/1 -3.57 1 21 -3.57 -3.57 U24497 U24497 Autosomal dominant PKD1 0.28 -3.57 down PTC Norm 18 3 publication 12538453 24 33 1469 5328 PLAU plasminogen activator, urokinase Gene_symbol_2_NCBI_Entrez 2 2 60 5.9 up 2 0 2/0 5.9 1 32 5.90 5.90 Plasminogen activator, urokinase PLAU 2.56 5.90 up PTC Norm 16 16 publication 15735049 4 8 335 5328 PLAU plasminogen activator, urokinase affy_probe_2_Entrez 2 2 60 5.9 up 2 0 2/0 5.9 1 32 5.90 5.90 37310_at 37310_at plasminogen activator, urokinase_PLAU PLAU up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 533 5334 PLCL1 phospholipase C-like 1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.1 down 1 0 0/1 -2.1 1 35 -2.10 -2.10 D42108 D42108 Phospholipase C PLC-L 2.1 -2.10 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1668 5348 FXYD1 FXYD domain containing ion transport regulator 1 (phospholemman) affy_probe_2_Entrez 1 1 55 -2.55 down 1 0 0/1 -2.55 1 55 -2.55 -2.55 205384_at 205384_at FXYD domain containing ion transport regulator 1 (phospholemman) FXYD1 -2.546 -2.55 down 6.07053E-07 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 505 5479 PPIB peptidylprolyl isomerase B (cyclophilin B) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.3 down 1 0 0/1 -2.3 1 35 -2.30 -2.30 M63573 M63573 Secreted cyclophilin-like protein CYPB 2.3 -2.30 down PTC;FVPTC FA;HN 14 21 publication 15240595 19 32 1403 5480 PPIC peptidylprolyl isomerase C (cyclophilin C) tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 up 1 0 1/0 0 0 0 0 0 ACCGTCCACT ACCGTCCACT cyclophilin C up 0.0245 FVPTC Norm 1 1 publication 14715705 4 8 342 5493 PPL periplakin affy_probe_2_Entrez 1 1 28 0 up 1 0 1/0 0 0 0 0 0 36890_at 36890_at periplakin_PPL PPL up PTC FTC;Norm 6 22 provided by authors 15337802 14 21 990 5529 PPP2R5E protein phosphatase 2, regulatory subunit B (B56), epsilon isoform clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 2.1 up 1 0 1/0 2.1 1 14 2.10 2.10 R53787 R53787 Protein phosphatase 2A B56-epsilon (PP2A) 2.1 2.10 up PTC Norm 7 7 publication 15041723 7 12 532 5547 PRCP prolylcarboxypeptidase (angiotensinase C) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.1 down 1 0 0/1 -2.1 1 35 -2.10 -2.10 L13977 L13977 Prolylcarboxypeptidase PCP 2.1 -2.10 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1658 5588 PRKCQ protein kinase C, theta affy_probe_2_Entrez 2 2 90 -5.16 down 2 0 0/2 -2.58 2 90 -2.20 -2.96 210039_s_at 210039_s_at protein kinase C, theta PRKCQ -2.367 -2.37 down 0.000919797 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1692 5588 PRKCQ protein kinase C, theta affy_probe_2_Entrez 2 2 90 -5.16 down 2 0 0/2 -2.58 2 90 -2.20 -2.96 210038_at 210038_at protein kinase C, theta PRKCQ -2.956 -2.96 down 0.000320748 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 525 5588 PRKCQ protein kinase C, theta clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 90 -5.16 down 2 0 0/2 -2.58 2 90 -2.20 -2.96 L07032 L07032 Protein kinase C PKC 2.2 -2.20 down PTC;FVPTC FA;HN 14 21 publication 15240595 16 24 1242 5596 MAPK4 mitogen-activated protein kinase 4 Gene_symbol_2_NCBI_Entrez 1 1 63 -2.2 down 1 0 0/1 -2.2 1 63 -2.20 -2.20 MAPK4 0.454545455 -2.20 down 0.01 PTC;FVPTC FA;HN 32 31 publication 15087409 10 16 737 5610 EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 affy_probe_2_Entrez 1 1 14 -4.24 down 1 0 0/1 -4.24 1 14 -4.24 -4.24 1008_f_at 1008_f_at Human interferon-inducible kinase PRKR -4.24 -4.24 down yes PTC GT 8 6 publication 15515157 7 12 474 5613 PRKX protein kinase, X-linked clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.7 down 1 0 0/1 -2.7 1 35 -2.70 -2.70 X85545 X85545 Protein kinase X1 PKX1 2.7 -2.70 down PTC;FVPTC FA;HN 14 21 publication 15240595 7 12 452 5624 PROC protein C (inactivator of coagulation factors Va and VIIIa) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -3.2 down 1 0 0/1 -3.2 1 35 -3.20 -3.20 X02750 X02750 Protein C precursor PROC 3.2 -3.20 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1564 5627 PROS1 protein S (alpha) affy_probe_2_Entrez 4 4 134 18.39 up 4 0 4/0 6.13 3 106 7.39 4.50 207808_s_at 207808_s_at --- --- 7.388 7.39 up 3.67179E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 3 6 128 5627 PROS1 protein S (alpha) clone_accession_2_NCBI_rna_accession_2_Entrez 4 4 134 18.39 up 4 0 4/0 6.13 3 106 7.39 4.50 M15036 M15036 Vitamin K-dependent plasma protein S PROS1 6.5 6.50 up no 0.001 PTC Norm 8 8 suppl. materials 11752453 4 8 330 5627 PROS1 protein S (alpha) affy_probe_2_Entrez 4 4 134 18.39 up 4 0 4/0 6.13 3 106 7.39 4.50 35752_s_at 35752_s_at protein S (alpha)_PROS1 PROS1 up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 426 5627 PROS1 protein S (alpha) clone_accession_2_NCBI_rna_accession_2_Entrez 4 4 134 18.39 up 4 0 4/0 6.13 3 106 7.39 4.50 M15036 M15036 S plasma protein PROS 4.5 4.50 up PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1637 5629 PROX1 prospero-related homeobox 1 affy_probe_2_Entrez 1 1 55 -2.02 down 1 0 0/1 -2.02 1 55 -2.02 -2.02 207401_at 207401_at prospero-related homeobox 1 PROX1 -2.024 -2.02 down 0.000209821 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 536 5631 PRPS1 phosphoribosyl pyrophosphate synthetase 1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.1 down 1 0 0/1 -2.1 1 35 -2.10 -2.10 D00860 D00860 Phosphoribosylpyrophosphate synthetase PRS 1 2.1 -2.10 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1735 5649 RELN reelin affy_probe_2_Entrez 1 1 55 -4.65 down 1 0 0/1 -4.65 1 55 -4.65 -4.65 205923_at 205923_at reelin RELN -4.649 -4.65 down 1.89052E-10 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 14 21 1020 5723 PSPH phosphoserine phosphatase Gene_symbol_2_NCBI_Entrez 1 1 14 0 up 1 0 1/0 0 0 0 0 0 L-3-Phosphoserine-phosphatase PSPH up PTC Norm 7 7 publication The gene name for this entry was determined manually from the description 15041723 2 4 105 5774 PTPN3 protein tyrosine phosphatase, non-receptor type 3 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 2 3.19 up 1 0 1/0 3.19 1 2 3.19 3.19 NM_002829 NM_002829 Protein tyrosine phosphatase nonreceptor 3 PTPN3 3.19 3.19 up PCL Norm 1 1 publication 15785240 12 19 852 5802 PTPRS protein tyrosine phosphatase, receptor type, S clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 21 -2.04 down 1 0 0/1 -2.04 1 21 -2.04 -2.04 U35234 U35234 Protein tyrosine phosphatase (PTPRS) 0.49 -2.04 down PTC Norm 18 3 publication 12538453 25 34 1574 5873 RAB27A RAB27A, member RAS oncogene family affy_probe_2_Entrez 2 2 90 6.18 up 2 0 2/0 3.09 2 90 3.98 2.20 210951_x_at 210951_x_at RAB27A, member RAS oncogene family RAB27A 5.588 5.59 up 3.30059E-06 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1584 5873 RAB27A RAB27A, member RAS oncogene family affy_probe_2_Entrez 2 2 90 6.18 up 2 0 2/0 3.09 2 90 3.98 2.20 209514_s_at 209514_s_at RAB27A, member RAS oncogene family RAB27A 4.243 4.24 up 8.57809E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1587 5873 RAB27A RAB27A, member RAS oncogene family affy_probe_2_Entrez 2 2 90 6.18 up 2 0 2/0 3.09 2 90 3.98 2.20 209515_s_at 209515_s_at RAB27A, member RAS oncogene family RAB27A 3.984 3.98 up 0.00340633 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 519 5873 RAB27A RAB27A, member RAS oncogene family clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 90 6.18 up 2 0 2/0 3.09 2 90 3.98 2.20 U57094 U57094 Small GTP-binding protein RAB27 2.2 2.20 up PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1592 5887 RAD23B RAD23 homolog B (S. cerevisiae) affy_probe_2_Entrez 1 1 55 2.37 up 1 0 1/0 2.37 1 55 2.37 2.37 201222_s_at 201222_s_at RAD23 homolog B (S. cerevisiae) RAD23B 3.495 3.49 up 0.013912466 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1619 5887 RAD23B RAD23 homolog B (S. cerevisiae) affy_probe_2_Entrez 1 1 55 2.37 up 1 0 1/0 2.37 1 55 2.37 2.37 201223_s_at 201223_s_at RAD23 homolog B (S. cerevisiae) RAD23B 2.371 2.37 up 0.043653268 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 439 5897 RAG2 recombination activating gene 2 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -3.7 down 1 0 0/1 -3.7 1 35 -3.70 -3.70 M94633 M94633 Recombination-activating protein-2 RAG2 3.7 -3.70 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1730 5909 RAP1GA1 RAP1, GTPase activating protein 1 affy_probe_2_Entrez 2 2 90 -7.92 down 2 0 0/2 -3.96 2 90 -3.50 -4.42 203911_at 203911_at RAP1, GTPase activating protein 1 RAP1GA1 -4.423 -4.42 down 0.039001953 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 441 5909 RAP1GA1 RAP1, GTPase activating protein 1 clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 90 -7.92 down 2 0 0/2 -3.96 2 90 -3.50 -4.42 M64788 M64788 GTPase-activating protein rap1GAP 3.5 -3.50 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1620 5921 RASA1 RAS p21 protein activator (GTPase activating protein) 1 affy_probe_2_Entrez 1 1 55 2.21 up 1 0 1/0 2.21 1 55 2.21 2.21 210621_s_at 210621_s_at RAS p21 protein activator (GTPase activating protein) 1 RASA1 2.370 2.37 up 0.029326205 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1626 5921 RASA1 RAS p21 protein activator (GTPase activating protein) 1 affy_probe_2_Entrez 1 1 55 2.21 up 1 0 1/0 2.21 1 55 2.21 2.21 202677_at 202677_at RAS p21 protein activator (GTPase activating protein) 1 RASA1 2.215 2.21 up 0.041850157 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 14 21 1000 5966 REL v-rel reticuloendotheliosis viral oncogene homolog (avian) Gene_symbol_2_NCBI_Entrez 1 1 14 0 up 1 0 1/0 0 0 0 0 0 V-rel avian reticuloendotheliosis viral oncogene REL up PTC Norm 7 7 publication The gene name for this entry was determined manually from the description 15041723 14 21 982 6000 RGS7 regulator of G-protein signalling 7 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 2.7 up 1 0 1/0 2.7 1 14 2.70 2.70 H24326 H24326 Regulator of G-protein signaling (RGS7) 2.7 2.70 up PTC Norm 7 7 publication 15041723 25 34 1748 6004 RGS16 regulator of G-protein signalling 16 affy_probe_2_Entrez 3 3 106 -12.45 down 3 0 0/3 -4.15 3 106 -2.40 -6.75 209325_s_at 209325_s_at regulator of G-protein signalling 16 RGS16 -5.588 -5.59 down 1.12702E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1760 6004 RGS16 regulator of G-protein signalling 16 affy_probe_2_Entrez 3 3 106 -12.45 down 3 0 0/3 -4.15 3 106 -2.40 -6.75 209324_s_at 209324_s_at regulator of G-protein signalling 16 RGS16 -6.745 -6.75 down 2.04741E-09 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 3 6 148 6004 RGS16 regulator of G-protein signalling 16 clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 106 -12.45 down 3 0 0/3 -4.15 3 106 -2.40 -6.75 U70426 U70426 A28-RGS14p RGS16 -3.3 -3.30 down no 0.0059 PTC Norm 8 8 suppl. materials 11752453 7 12 503 6004 RGS16 regulator of G-protein signalling 16 clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 106 -12.45 down 3 0 0/3 -4.15 3 106 -2.40 -6.75 U70426 U70426 A28-RGS14p mRNA A28-RGS14 2.4 -2.40 down PTC;FVPTC FA;HN 14 21 publication 15240595 7 12 517 6035 RNASE1 ribonuclease, RNase A family, 1 (pancreatic) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.3 down 1 0 0/1 -2.3 1 35 -2.30 -2.30 D26129 D26129 Ribonuclease A RNS1 2.3 -2.30 down PTC;FVPTC FA;HN 14 21 publication 15240595 7 12 480 6154 RPL26 ribosomal protein L26 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.6 down 1 0 0/1 -2.6 1 35 -2.60 -2.60 X69392 X69392 Ribosomal protein L26 RPL26 2.6 -2.60 down PTC;FVPTC FA;HN 14 21 publication 15240595 24 33 1459 6258 RXRG retinoid X receptor, gamma Gene_symbol_2_NCBI_Entrez 2 2 87 17.25 up 2 0 2/0 8.625 2 87 11.55 5.70 Retinoid X receptor gamma RXRG 3.53 11.55 up PTC Norm 16 16 publication 15735049 25 34 1573 6258 RXRG retinoid X receptor, gamma affy_probe_2_Entrez 2 2 87 17.25 up 2 0 2/0 8.625 2 87 11.55 5.70 205954_at 205954_at retinoid X receptor, gamma RXRG 5.701 5.70 up 0.007459523 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 461 6261 RYR1 ryanodine receptor 1 (skeletal) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 2.9 up 1 0 1/0 2.9 1 35 2.90 2.90 U48508 U48508 Skeletal muscle ryanodine receptor gene CCO 2.9 2.90 up PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1690 6262 RYR2 ryanodine receptor 2 (cardiac) affy_probe_2_Entrez 1 1 55 -3.74 down 1 0 0/1 -3.74 1 55 -3.74 -3.74 207557_s_at 207557_s_at ryanodine receptor 2 (cardiac) RYR2 -2.936 -2.94 down 0.000836639 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1722 6262 RYR2 ryanodine receptor 2 (cardiac) affy_probe_2_Entrez 1 1 55 -3.74 down 1 0 0/1 -3.74 1 55 -3.74 -3.74 214044_at 214044_at ryanodine receptor 2 (cardiac) RYR2 -3.743 -3.74 down 3.18078E-10 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 4 8 368 6273 S100A2 S100 calcium binding protein A2 affy_probe_2_Entrez 1 1 28 0 up 1 0 1/0 0 0 0 0 0 35726_at 35726_at S100 calcium binding protein A2_S100A2 S100A2 up PTC FTC;Norm 6 22 provided by authors 15337802 4 8 374 6275 S100A4 S100 calcium binding protein A4 (calcium protein, calvasculin, metastasin, murine placental homolog) affy_probe_2_Entrez 1 1 28 0 up 1 0 1/0 0 0 0 0 0 38087_s_at 38087_s_at S100 calcium binding protein A4 (calcium protein, calvasculin, metastasin, murine placental homolog)_S100A4 S100A4 up PTC FTC;Norm 6 22 provided by authors 15337802 24 33 1510 6277 S100A6 S100 calcium binding protein A6 (calcyclin) Gene_symbol_2_NCBI_Entrez 1 1 32 1.93 up 1 0 1/0 1.93 1 32 1.93 1.93 S100 calcium binding protein A6 (calcyclin) S100A6 0.945 1.93 up PTC Norm 16 16 publication 15735049 24 33 1498 6282 S100A11 S100 calcium binding protein A11 (calgizzarin) Gene_symbol_2_NCBI_Entrez 2 2 60 2.52 up 2 0 2/0 2.52 1 32 2.52 2.52 S100 calcium binding protein A11 (calgizzarin) S100A11 1.335 2.52 up PTC Norm 16 16 publication 15735049 4 8 365 6282 S100A11 S100 calcium binding protein A11 (calgizzarin) affy_probe_2_Entrez 2 2 60 2.52 up 2 0 2/0 2.52 1 32 2.52 2.52 38138_at 38138_at S100 calcium binding protein A11 (calgizzarin)_S100A11 S100A11 up PTC FTC;Norm 6 22 provided by authors 15337802 14 21 988 6314 ATXN7 ataxin 7 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 2.2 up 1 0 1/0 2.2 1 14 2.20 2.20 AA704255 AA704255 Spinocerebellar ataxia 7 2.2 2.20 up PTC Norm 7 7 publication 15041723 7 12 502 6355 CCL8 chemokine (C-C motif) ligand 8 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.4 down 1 0 0/1 -2.4 1 35 -2.40 -2.40 Y16645 Y16645 Monocyte chemotactic protein-2 MCP-2 2.4 -2.40 down PTC;FVPTC FA;HN 14 21 publication 15240595 24 33 1535 6359 CCL15 chemokine (C-C motif) ligand 15 Gene_symbol_2_NCBI_Entrez 1 1 32 -2.47 down 1 0 0/1 -2.47 1 32 -2.47 -2.47 Chemokine (C-C motif) ligand 15 CCL15 -1.305 -2.47 down PTC Norm 16 16 publication 15735049 25 34 1776 6366 CCL21 chemokine (C-C motif) ligand 21 affy_probe_2_Entrez 2 2 71 -28.97 down 2 0 0/2 -14.485 2 71 -11.37 -17.60 204606_at 204606_at chemokine (C-C motif) ligand 21 CCL21 -11.370 -11.37 down 0.001106354 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 3 6 164 6366 CCL21 chemokine (C-C motif) ligand 21 clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 71 -28.97 down 2 0 0/2 -14.485 2 71 -11.37 -17.60 AB002409 AB002409 Small inducible cytokine subfamily, member 21 SCYA21 -17.6 -17.60 down no 0.02 PTC Norm 8 8 suppl. materials 11752453 25 34 1586 6385 SDC4 syndecan 4 (amphiglycan, ryudocan) affy_probe_2_Entrez 4 4 134 10.57 up 4 0 4/0 3.52333333333333 3 106 4.17 2.90 202071_at 202071_at syndecan 4 (amphiglycan, ryudocan) SDC4 4.168 4.17 up 0.036184849 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 3 6 137 6385 SDC4 syndecan 4 (amphiglycan, ryudocan) clone_accession_2_NCBI_rna_accession_2_Entrez 4 4 134 10.57 up 4 0 4/0 3.52333333333333 3 106 4.17 2.90 D79206 D79206 Ryudocan core protein SDC4 3.5 3.50 up no 0.0003 PTC Norm 8 8 suppl. materials 11752453 4 8 347 6385 SDC4 syndecan 4 (amphiglycan, ryudocan) affy_probe_2_Entrez 4 4 134 10.57 up 4 0 4/0 3.52333333333333 3 106 4.17 2.90 35844_at 35844_at syndecan 4 (amphiglycan, ryudocan)_SDC4 SDC4 up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 460 6385 SDC4 syndecan 4 (amphiglycan, ryudocan) clone_accession_2_NCBI_rna_accession_2_Entrez 4 4 134 10.57 up 4 0 4/0 3.52333333333333 3 106 4.17 2.90 D79206 D79206 Ryudocan core protein SYND4 2.9 2.90 up PTC;FVPTC FA;HN 14 21 publication 15240595 14 21 983 6432 SFRS7 splicing factor, arginine/serine-rich 7, 35kDa clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 2.5 up 1 0 1/0 2.5 1 14 2.50 2.50 H54020 H54020 Splicing factor (9G8) 2.5 2.50 up PTC Norm 7 7 publication 15041723 3 6 118 6439 SFTPB surfactant, pulmonary-associated protein B clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 44 12.5 up 2 0 2/0 12.5 1 16 12.50 12.50 J02761 J02761 Surfactant, pulmonary-associated protein B SFTPB 12.5 12.50 up no 0.03 PTC Norm 8 8 suppl. materials 11752453 4 8 316 6439 SFTPB surfactant, pulmonary-associated protein B affy_probe_2_Entrez 2 2 44 12.5 up 2 0 2/0 12.5 1 16 12.50 12.50 37004_at 37004_at surfactant, pulmonary-associated protein B_SFTPB SFTPB up PTC FTC;Norm 6 22 provided by authors 15337802 24 33 1474 6585 SLIT1 slit homolog 1 (Drosophila) Gene_symbol_2_NCBI_Entrez 1 1 32 5.21 up 1 0 1/0 5.21 1 32 5.21 5.21 Slit homologue 1 (Drosophila) SLIT1 2.38 5.21 up PTC Norm 16 16 publication 15735049 24 33 1468 6590 SLPI secretory leukocyte protease inhibitor (antileukoproteinase) Gene_symbol_2_NCBI_Entrez 3 3 95 10.32 up 3 0 3/0 5.16 2 67 6.52 3.80 Secretory leukocyte protease inhibitor (antileukoproteinase) SLPI 2.705 6.52 up PTC Norm 16 16 publication 15735049 4 8 344 6590 SLPI secretory leukocyte protease inhibitor (antileukoproteinase) affy_probe_2_Entrez 3 3 95 10.32 up 3 0 3/0 5.16 2 67 6.52 3.80 32275_at 32275_at secretory leukocyte protease inhibitor (antileukoproteinase)_SLPI SLPI up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 437 6590 SLPI secretory leukocyte protease inhibitor (antileukoproteinase) clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 95 10.32 up 3 0 3/0 5.16 2 67 6.52 3.80 X04470 X04470 Precursor alkaline phosphatase HUSI-I 3.8 3.80 up PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1588 6597 SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 affy_probe_2_Entrez 1 1 55 2.17 up 1 0 1/0 2.17 1 55 2.17 2.17 215714_s_at 215714_s_at SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 SMARCA4 3.978 3.98 up 0.007393916 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1627 6597 SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 affy_probe_2_Entrez 1 1 55 2.17 up 1 0 1/0 2.17 1 55 2.17 2.17 208794_s_at 208794_s_at SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 SMARCA4 2.171 2.17 up 0.044864178 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1673 6640 SNTA1 syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component) affy_probe_2_Entrez 2 2 90 -6.63 down 2 0 0/2 -3.315 2 90 -2.63 -4.00 203516_at 203516_at syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component) SNTA1 -2.630 -2.63 down 8.3961E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 433 6640 SNTA1 syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component) clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 90 -6.63 down 2 0 0/2 -3.315 2 90 -2.63 -4.00 U40571 U40571 Dystrophin-binding intracellular membrane-associated muscle protein SNT1 4 -4.00 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1597 6642 SNX1 sorting nexin 1 affy_probe_2_Entrez 1 1 55 3.29 up 1 0 1/0 3.29 1 55 3.29 3.29 214531_s_at 214531_s_at sorting nexin 1 SNX1 3.290 3.29 up 7.87124E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 499 6659 SOX4 SRY (sex determining region Y)-box 4 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 2.4 up 1 0 1/0 2.4 1 35 2.40 2.40 X70683 X70683 SOX-4 protein SOX-4 2.4 2.40 up PTC;FVPTC FA;HN 14 21 publication 15240595 14 21 969 6668 SP2 Sp2 transcription factor clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 34 up 1 0 1/0 34 1 14 34.00 34.00 T81103 T81103 Sp2 transcription factor 34 34.00 up PTC Norm 7 7 publication 15041723 17 28 1273 6678 SPARC secreted protein, acidic, cysteine-rich (osteonectin) tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 down 1 0 0/1 0 0 0 0 0 ATGTGAAGAG ATGTGAAGAG down PTC ATC 1 1 publication 11076659 25 34 1581 6692 SPINT1 serine protease inhibitor, Kunitz type 1 affy_probe_2_Entrez 1 1 55 4.45 up 1 0 1/0 4.45 1 55 4.45 4.45 202826_at 202826_at serine protease inhibitor, Kunitz type 1 SPINT1 4.450 4.45 up 1.08009E-10 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1684 6722 SRF serum response factor (c-fos serum response element-binding transcription factor) affy_probe_2_Entrez 1 1 55 -2.87 down 1 0 0/1 -2.87 1 55 -2.87 -2.87 202401_s_at 202401_s_at serum response factor (c-fos serum response element-binding transcription factor) SRF -2.865 -2.87 down 0.003713672 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1511 6768 ST14 suppression of tumorigenicity 14 (colon carcinoma, matriptase, epithin) Gene_symbol_2_NCBI_Entrez 1 1 32 1.82 up 1 0 1/0 1.82 1 32 1.82 1.82 Suppression of tumorigenicity 14 (colon carcinoma, matriptase, epithin) ST14 0.86 1.82 up PTC Norm 16 16 publication 15735049 3 6 146 6781 STC1 stanniocalcin 1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 16 -2.8 down 1 0 0/1 -2.8 1 16 -2.80 -2.80 U25997 U25997 Stanniocalcin precursor (STC) STC1 -2.8 -2.80 down no 0.022 PTC Norm 8 8 suppl. materials 11752453 7 12 449 6834 SURF1 surfeit 1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -3.3 down 1 0 0/1 -3.3 1 35 -3.30 -3.30 Z35093 Z35093 SURF-1 SURF1 3.3 -3.30 down PTC;FVPTC FA;HN 14 21 publication 15240595 10 16 721 6925 TCF4 transcription factor 4 affy_probe_2_Entrez 1 1 14 -2.29 down 1 0 0/1 -2.29 1 14 -2.29 -2.29 32872_at 32872_at cDNA DKFZp564I083 -2.29 -2.29 down yes PTC GT 8 6 publication 15515157 7 12 511 6993 TCTEL1 t-complex-associated-testis-expressed 1-like 1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.3 down 1 0 0/1 -2.3 1 35 -2.30 -2.30 D50663 D50663 T Complex-associated testis-expressed 1-like 1 CW-1 2.3 -2.30 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1649 7004 TEAD4 TEA domain family member 4 affy_probe_2_Entrez 1 1 55 -2.19 down 1 0 0/1 -2.19 1 55 -2.19 -2.19 41037_at 41037_at TEA domain family member 4 TEAD4 -2.185 -2.19 down 0.000195038 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 10 17 752 7033 TFF3 trefoil factor 3 (intestinal) affy_probe_2_Entrez 4 4 122 -91.97 down 4 0 0/4 -22.9925 4 122 -7.60 -63.55 31477_at 31477_at Trefoil factor 3 (intestinal) TFF3 -6.81 -6.81 down yes yes PTC Norm 8 8 publication 15515157 10 17 753 7033 TFF3 trefoil factor 3 (intestinal) affy_probe_2_Entrez 4 4 122 -91.97 down 4 0 0/4 -22.9925 4 122 -7.60 -63.55 37897_s_at 37897_s_at Trefoil factor 3 (intestinal) TFF3 -8.52 -8.52 down yes yes PTC Norm 8 8 publication 15515157 25 34 1785 7033 TFF3 trefoil factor 3 (intestinal) affy_probe_2_Entrez 4 4 122 -91.97 down 4 0 0/4 -22.9925 4 122 -7.60 -63.55 204623_at 204623_at trefoil factor 3 (intestinal) TFF3 -63.550 -63.55 down 9.36533E-11 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 3 6 163 7033 TFF3 trefoil factor 3 (intestinal) clone_accession_2_NCBI_rna_accession_2_Entrez 4 4 122 -91.97 down 4 0 0/4 -22.9925 4 122 -7.60 -63.55 L08044 L08044 Intestinal trefoil factor TFF3 -12.3 -12.30 down yes 0.004 PTC Norm 8 8 suppl. materials 11752453 7 12 412 7033 TFF3 trefoil factor 3 (intestinal) clone_accession_2_NCBI_rna_accession_2_Entrez 4 4 122 -91.97 down 4 0 0/4 -22.9925 4 122 -7.60 -63.55 AI985964 AI985964 Intestinal trefoil factor, human TFF3 7.6 -7.60 down yes PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1651 7035 TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) affy_probe_2_Entrez 1 1 55 -2.22 down 1 0 0/1 -2.22 1 55 -2.22 -2.22 210664_s_at 210664_s_at tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) TFPI -2.221 -2.22 down 1.48179E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1465 7039 TGFA transforming growth factor, alpha Gene_symbol_2_NCBI_Entrez 3 3 122 19.15 up 3 0 3/0 6.38333333333333 3 122 7.91 3.80 Transforming growth factor, alpha TGFA 2.895 7.44 up PTC Norm 16 16 publication 15735049 25 34 1562 7039 TGFA transforming growth factor, alpha affy_probe_2_Entrez 3 3 122 19.15 up 3 0 3/0 6.38333333333333 3 122 7.91 3.80 205016_at 205016_at transforming growth factor, alpha TGFA 7.907 7.91 up 7.0336E-06 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 438 7039 TGFA transforming growth factor, alpha clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 122 19.15 up 3 0 3/0 6.38333333333333 3 122 7.91 3.80 X70340 X70340 TGF TGFA 3.8 3.80 up PTC;FVPTC FA;HN 14 21 publication 15240595 17 28 1276 7045 TGFBI transforming growth factor, beta-induced, 68kDa tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 down 1 0 0/1 0 0 0 0 0 GTGTGTTTGT GTGTGTTTGT down PTC ATC 1 1 publication 11076659 4 8 325 7052 TGM2 transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase) affy_probe_2_Entrez 1 1 28 0 up 1 0 1/0 0 0 0 0 0 38404_at 38404_at transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)_TGM2 TGM2 up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 427 7060 THBS4 thrombospondin 4 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -4.5 down 1 0 0/1 -4.5 1 35 -4.50 -4.50 Z19585 Z19585 Thrombospondin-4 THBS4 4.5 -4.50 down PTC;FVPTC FA;HN 14 21 publication 15240595 10 16 711 7076 TIMP1 tissue inhibitor of metalloproteinase 1 (erythroid potentiating activity, collagenase inhibitor) affy_probe_2_Entrez 5 6 146 27.79 up 6 0 6/0 5.558 5 118 10.31 3.20 1693_s_at 1693_s_at Tissue inhibitor of metalloproteinase 1 TIMP1 10.31 10.31 up yes yes PTC GT 8 6 publication 15515157 10 17 749 7076 TIMP1 tissue inhibitor of metalloproteinase 1 (erythroid potentiating activity, collagenase inhibitor) affy_probe_2_Entrez 5 6 146 27.79 up 6 0 6/0 5.558 5 118 10.31 3.20 1693_s_at 1693_s_at Tissue inhibitor of metalloproteinase 1 TIMP1 5.17 5.17 up yes no PTC Norm 8 8 publication 15515157 12 19 850 7076 TIMP1 tissue inhibitor of metalloproteinase 1 (erythroid potentiating activity, collagenase inhibitor) clone_accession_2_NCBI_rna_accession_2_Entrez 5 6 146 27.79 up 6 0 6/0 5.558 5 118 10.31 3.20 X03124 X03124 Erythroid potentiating activity (TIMP-1) 3.2 3.20 up yes yes PTC Norm 18 3 publication 12538453 24 33 1475 7076 TIMP1 tissue inhibitor of metalloproteinase 1 (erythroid potentiating activity, collagenase inhibitor) Gene_symbol_2_NCBI_Entrez 5 6 146 27.79 up 6 0 6/0 5.558 5 118 10.31 3.20 Tissue inhibitor of metalloproteinase 1 (erythroid potentiating activity, collagenase inhibitor) TIMP1 2.325 5.01 up PTC Norm 16 16 publication 15735049 4 8 318 7076 TIMP1 tissue inhibitor of metalloproteinase 1 (erythroid potentiating activity, collagenase inhibitor) affy_probe_2_Entrez 5 6 146 27.79 up 6 0 6/0 5.558 5 118 10.31 3.20 1693_s_at 1693_s_at tissue inhibitor of metalloproteinase 1 (erythroid potentiating activity, collagenase inhibitor)_TIMP1 TIMP1 up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 430 7076 TIMP1 tissue inhibitor of metalloproteinase 1 (erythroid potentiating activity, collagenase inhibitor) clone_accession_2_NCBI_rna_accession_2_Entrez 5 6 146 27.79 up 6 0 6/0 5.558 5 118 10.31 3.20 D11139 D11139 Tissue inhibitor of metalloproteinases TIMP 4.1 4.10 up PTC;FVPTC FA;HN 14 21 publication 15240595 24 33 1533 7091 TLE4 transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) Gene_symbol_2_NCBI_Entrez 1 1 32 -2.39 down 1 0 0/1 -2.39 1 32 -2.39 -2.39 Transducin-like enhancer of split 4 [E(sp1) homologue, Drosophila] TLE4 -1.26 -2.39 down PTC Norm 16 16 publication 15735049 14 21 978 7103 TSPAN8 tetraspanin 8 clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 69 0.56 even 1 1 1/1 0.28 2 69 2.80 -2.24 AA045699 AA045699 Tumor-associated antigen CO-029 2.8 2.80 up PTC Norm 7 7 publication 15041723 25 34 1655 7103 TSPAN8 tetraspanin 8 affy_probe_2_Entrez 2 2 69 0.56 even 1 1 1/1 0.28 2 69 2.80 -2.24 203824_at 203824_at transmembrane 4 superfamily member 3 TM4SF3 -2.240 -2.24 down 0.024228004 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 490 7123 CLEC3B C-type lectin domain family 3, member B clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.5 down 1 0 0/1 -2.5 1 35 -2.50 -2.50 X64559 X64559 Tetranectin (plasminogen-kringle-4-binding protein) TN 2.5 -2.50 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1687 7148 TNXB tenascin XB affy_probe_2_Entrez 1 1 55 -3.85 down 1 0 0/1 -3.85 1 55 -3.85 -3.85 208609_s_at 208609_s_at tenascin XB /// tenascin XB TNXB -2.880 -2.88 down 0.046554302 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1723 7148 TNXB tenascin XB affy_probe_2_Entrez 1 1 55 -3.85 down 1 0 0/1 -3.85 1 55 -3.85 -3.85 206093_x_at 206093_x_at tenascin XB TNXB -3.852 -3.85 down 0.022672896 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 10 16 744 7173 TPO thyroid peroxidase affy_probe_2_Entrez 4 4 67 -21.47 down 4 0 0/4 -7.15666666666667 3 65 -5.40 -8.60 35928_at 35928_at Thyroid peroxidase TPO -7.47 -7.47 down yes PTC GT 8 6 publication 15515157 19 32 1415 7173 TPO thyroid peroxidase tag_2_refseq_or_mgc_2_Entrez 4 4 67 -21.47 down 4 0 0/4 -7.15666666666667 3 65 -5.40 -8.60 GATGAATAAA GATGAATAAA thyroid peroxidase (TPO) down 0.0001 FVPTC Norm 1 1 publication 14715705 3 6 161 7173 TPO thyroid peroxidase clone_accession_2_NCBI_rna_accession_2_Entrez 4 4 67 -21.47 down 4 0 0/4 -7.15666666666667 3 65 -5.40 -8.60 J02969 J02969 Thyroid peroxidase TPO -8.6 -8.60 down no 0.0022 PTC Norm 8 8 suppl. materials 11752453 7 12 419 7173 TPO thyroid peroxidase clone_accession_2_NCBI_rna_accession_2_Entrez 4 4 67 -21.47 down 4 0 0/4 -7.15666666666667 3 65 -5.40 -8.60 J02969 J02969 Thyroid peroxidase TPX 5.4 -5.40 down PTC;FVPTC FA;HN 14 21 publication 15240595 10 16 710 7262 PHLDA2 pleckstrin homology-like domain, family A, member 2 affy_probe_2_Entrez 3 3 58 21.56 up 3 0 3/0 10.78 2 30 15.96 5.60 31888_s_at 31888_s_at Tumor-suppressing subtransferable candidate 3 TSSC3 15.96 15.96 up yes yes PTC GT 8 6 publication 15515157 3 6 130 7262 PHLDA2 pleckstrin homology-like domain, family A, member 2 clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 58 21.56 up 3 0 3/0 10.78 2 30 15.96 5.60 AF001294 AF001294 Tumor suppressing subtransferable candidate 3 TSSC3 5.6 5.60 up no 0.0001 PTC Norm 8 8 suppl. materials 11752453 4 8 355 7262 PHLDA2 pleckstrin homology-like domain, family A, member 2 affy_probe_2_Entrez 3 3 58 21.56 up 3 0 3/0 10.78 2 30 15.96 5.60 31888_s_at 31888_s_at tumor suppressing subtransferable candidate 3_TSSC3 TSSC3 up PTC FTC;Norm 6 22 provided by authors 15337802 24 33 1513 7264 TSTA3 tissue specific transplantation antigen P35B Gene_symbol_2_NCBI_Entrez 1 1 32 1.6 up 1 0 1/0 1.6 1 32 1.60 1.60 Tissue specific transplantation antigen P35B TSTA3 0.68 1.60 up PTC Norm 16 16 publication 15735049 7 12 524 7284 TUFM Tu translation elongation factor, mitochondrial clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.2 down 1 0 0/1 -2.2 1 35 -2.20 -2.20 S75463 S75463 P43 EFTU 2.2 -2.20 down PTC;FVPTC FA;HN 14 21 publication 15240595 19 32 1422 7299 TYR tyrosinase (oculocutaneous albinism IA) tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 up 1 0 1/0 0 0 0 0 0 TTGGCTGGGC TTGGCTGGGC EST up 0.0015 FVPTC Norm 1 1 publication 14715705 7 12 459 7301 TYRO3 TYRO3 protein tyrosine kinase clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 2.9 up 1 0 1/0 2.9 1 35 2.90 2.90 D17517 D17517 Sky RSE 2.9 2.90 up PTC;FVPTC FA;HN 14 21 publication 15240595 3 6 122 7378 UPP1 uridine phosphorylase 1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 16 8.3 up 1 0 1/0 8.3 1 16 8.30 8.30 X90858 X90858 Uridine phosphorylase UP 8.3 8.30 up no 0.002 PTC Norm 8 8 suppl. materials 11752453 14 21 976 7410 VAV2 vav 2 oncogene clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 0 up 1 0 1/0 0 0 0 0 0 AA682337 AA682337 Vav 2 oncogene 3 3.00 up PTC Norm 7 7 publication 15041723 14 21 999 7410 VAV2 vav 2 oncogene Gene_symbol_2_NCBI_Entrez 1 1 14 0 up 1 0 1/0 0 0 0 0 0 vav 2 VAV2 up PTC Norm 7 7 publication The gene name for this entry was determined manually from the description 15041723 14 21 1002 7423 VEGFB vascular endothelial growth factor B Gene_symbol_2_NCBI_Entrez 1 1 14 0 up 1 0 1/0 0 0 0 0 0 VEGF-B VEGFB up PTC Norm 7 7 publication The gene name for this entry was determined manually from the description 15041723 7 12 472 7436 VLDLR very low density lipoprotein receptor clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.7 down 1 0 0/1 -2.7 1 35 -2.70 -2.70 D16532 D16532 Very-low-density lipoprotein receptor VLDLR 2.7 -2.70 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1663 7466 WFS1 Wolfram syndrome 1 (wolframin) affy_probe_2_Entrez 1 1 55 -2.48 down 1 0 0/1 -2.48 1 55 -2.48 -2.48 202908_at 202908_at Wolfram syndrome 1 (wolframin) WFS1 -2.476 -2.48 down 0.024879125 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1678 7481 WNT11 wingless-type MMTV integration site family, member 11 affy_probe_2_Entrez 1 1 55 -2.75 down 1 0 0/1 -2.75 1 55 -2.75 -2.75 206737_at 206737_at wingless-type MMTV integration site family, member 11 WNT11 -2.747 -2.75 down 9.50816E-08 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 16 24 1229 7507 XPA xeroderma pigmentosum, complementation group A Gene_symbol_2_NCBI_Entrez 1 1 63 -1.75 down 1 0 0/1 -1.75 1 63 -1.75 -1.75 XPA 0.572052402 -1.75 down 0.01 PTC;FVPTC FA;HN 32 31 publication 15087409 19 32 1410 7508 XPC xeroderma pigmentosum, complementation group C tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 up 1 0 1/0 0 0 0 0 0 CACGGAGGCG CACGGAGGCG xeroderma pigmentosum, group C up 0.0245 FVPTC Norm 1 1 publication 14715705 10 16 729 7707 ZNF148 zinc finger protein 148 (pHZ-52) affy_probe_2_Entrez 1 1 14 -9.07 down 1 0 0/1 -9.07 1 14 -9.07 -9.07 41465_at 41465_at Zinc finger protein 148 (pHZ-52) ZNF148 -2.9 -2.90 down yes PTC GT 8 6 publication 15515157 10 16 745 7707 ZNF148 zinc finger protein 148 (pHZ-52) affy_probe_2_Entrez 1 1 14 -9.07 down 1 0 0/1 -9.07 1 14 -9.07 -9.07 41466_s_at 41466_s_at Zinc finger protein 148 (pHZ-52) ZNF148 -9.07 -9.07 down yes PTC GT 8 6 publication 15515157 7 12 507 7849 PAX8 paired box gene 8 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.3 down 1 0 0/1 -2.3 1 35 -2.30 -2.30 X69699 X69699 Pax8 PAX8 2.3 -2.30 down PTC;FVPTC FA;HN 14 21 publication 15240595 3 6 149 7932 OR2H2 olfactory receptor, family 2, subfamily H, member 2 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 16 -3.3 down 1 0 0/1 -3.3 1 16 -3.30 -3.30 AL031983 AL031983 Diubiquitin UBD -3.3 -3.30 down no 0.0115 PTC Norm 8 8 suppl. materials 11752453 14 21 970 7984 ARHGEF5 Rho guanine nucleotide exchange factor (GEF) 5 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 7.6 up 1 0 1/0 7.6 1 14 7.60 7.60 AA045822 AA045822 Guanine nucleotide regulatory protein (tim) 7.6 7.60 up PTC Norm 7 7 publication 15041723 24 33 1466 7991 TUSC3 tumor suppressor candidate 3 Gene_symbol_2_NCBI_Synonym_2_Entrez 4 4 131 17.52 up 4 0 4/0 5.84 3 103 7.70 2.43 Putative prostate cancer tumor suppressor N33 2.885 7.39 up PTC Norm 16 16 publication 15735049 25 34 1557 7991 TUSC3 tumor suppressor candidate 3 affy_probe_2_Entrez 4 4 131 17.52 up 4 0 4/0 5.84 3 103 7.70 2.43 213423_x_at 213423_x_at tumor suppressor candidate 3 TUSC3 9.579 9.58 up 3.13192E-08 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1567 7991 TUSC3 tumor suppressor candidate 3 affy_probe_2_Entrez 4 4 131 17.52 up 4 0 4/0 5.84 3 103 7.70 2.43 209228_x_at 209228_x_at tumor suppressor candidate 3 TUSC3 6.483 6.48 up 2.40645E-06 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1618 7991 TUSC3 tumor suppressor candidate 3 affy_probe_2_Entrez 4 4 131 17.52 up 4 0 4/0 5.84 3 103 7.70 2.43 209227_at 209227_at tumor suppressor candidate 3 TUSC3 2.433 2.43 up 0.021654313 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 3 6 125 7991 TUSC3 tumor suppressor candidate 3 clone_accession_2_NCBI_rna_accession_2_Entrez 4 4 131 17.52 up 4 0 4/0 5.84 3 103 7.70 2.43 U42349 U42349 Putative prostate cancer tumor suppressor N33 7.7 7.70 up no 0.0001 PTC Norm 8 8 suppl. materials 11752453 4 8 363 7991 TUSC3 tumor suppressor candidate 3 affy_probe_2_Entrez 4 4 131 17.52 up 4 0 4/0 5.84 3 103 7.70 2.43 36851_g_at 36851_g_at Putative prostate cancer tumor suppressor_N33 N33 up PTC FTC;Norm 6 22 provided by authors 15337802 25 34 1555 8091 HMGA2 high mobility group AT-hook 2 affy_probe_2_Entrez 1 1 55 10.33 up 1 0 1/0 10.33 1 55 10.33 10.33 208025_s_at 208025_s_at high mobility group AT-hook 2 /// high mobility group AT-hook 2 HMGA2 10.329 10.33 up 0.013091579 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 4 8 371 8204 NRIP1 nuclear receptor interacting protein 1 affy_probe_2_Entrez 2 2 63 2.5 up 2 0 2/0 2.5 1 35 2.50 2.50 40088_at 40088_at nuclear receptor interacting protein 1_NRIP1 NRIP1 up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 486 8204 NRIP1 nuclear receptor interacting protein 1 clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 63 2.5 up 2 0 2/0 2.5 1 35 2.50 2.50 X84373 X84373 Nuclear factor RIP140 RIP140 2.5 2.50 up PTC;FVPTC FA;HN 14 21 publication 15240595 10 16 736 8364 HIST1H4C histone 1, H4c affy_probe_2_Entrez 2 2 69 -6.82 down 2 0 0/2 -3.41 2 69 -2.60 -4.22 39969_at 39969_at H4 histone family, member G H4FG -4.22 -4.22 down yes PTC GT 8 6 publication 15515157 25 34 1670 8364 HIST1H4C histone 1, H4c affy_probe_2_Entrez 2 2 69 -6.82 down 2 0 0/2 -3.41 2 69 -2.60 -4.22 205967_at 205967_at histone 1, H4f HIST1H4F -2.597 -2.60 down 0.011390558 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1729 8406 SRPX sushi-repeat-containing protein, X-linked affy_probe_2_Entrez 1 1 55 -4.28 down 1 0 0/1 -4.28 1 55 -4.28 -4.28 204955_at 204955_at sushi-repeat-containing protein, X-linked SRPX -4.282 -4.28 down 0.019937143 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 504 8459 TPST2 tyrosylprotein sulfotransferase 2 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.4 down 1 0 0/1 -2.4 1 35 -2.40 -2.40 AF049891 AF049891 Type II transmembrane protein: Golga enzyme TPST2 2.4 -2.40 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1769 8470 ARGBP2 Arg/Abl-interacting protein ArgBP2 affy_probe_2_Entrez 2 2 90 -10.65 down 2 0 0/2 -5.325 2 90 -2.80 -7.85 204288_s_at 204288_s_at Arg/Abl-interacting protein ArgBP2 ARGBP2 -7.855 -7.85 down 0.045328617 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 468 8470 ARGBP2 Arg/Abl-interacting protein ArgBP2 clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 90 -10.65 down 2 0 0/2 -5.325 2 90 -2.80 -7.85 AF049884 AF049884 KIAA0777 gene product KIAA0777 2.8 -2.80 down PTC;FVPTC FA;HN 14 21 publication 15240595 14 21 971 8493 PPM1D protein phosphatase 1D magnesium-dependent, delta isoform clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 4.7 up 1 0 1/0 4.7 1 14 4.70 4.70 N33955 N33955 Protein phosphatase Wip1 4.7 4.70 up PTC Norm 7 7 publication 15041723 25 34 1617 8547 FCN3 ficolin (collagen/fibrinogen domain containing) 3 (Hakata antigen) affy_probe_2_Entrez 1 1 55 2.45 up 1 0 1/0 2.45 1 55 2.45 2.45 205866_at 205866_at --- --- 2.451 2.45 up 0.022158313 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 10 16 717 8560 DEGS1 degenerative spermatocyte homolog 1, lipid desaturase (Drosophila) affy_probe_2_Entrez 1 1 14 5.24 up 1 0 1/0 5.24 1 14 5.24 5.24 33337_at 33337_at Degenerative spermatocyte lipid desaturase DEGS 5.24 5.24 up yes PTC GT 8 6 publication 15515157 16 24 1210 8562 DENR density-regulated protein Gene_symbol_2_NCBI_Entrez 1 1 63 -1.51 down 1 0 0/1 -1.51 1 63 -1.51 -1.51 DENR 0.662337662 -1.51 down 0.02 PTC;FVPTC FA;HN 32 31 publication 15087409 3 6 116 8572 PDLIM4 PDZ and LIM domain 4 clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 44 14.5 up 2 0 2/0 14.5 1 16 14.50 14.50 X93510 X93510 37-kDa LIM domain protein RIL 14.5 14.50 up no 0.003 PTC Norm 8 8 suppl. materials 11752453 4 8 349 8572 PDLIM4 PDZ and LIM domain 4 affy_probe_2_Entrez 2 2 44 14.5 up 2 0 2/0 14.5 1 16 14.50 14.50 32610_at 32610_at LIM domain protein_RIL RIL up PTC FTC;Norm 6 22 provided by authors 15337802 16 24 1247 8630 HSD17B6 hydroxysteroid (17-beta) dehydrogenase 6 Gene_symbol_2_NCBI_Synonym_2_Entrez 1 1 63 -3.02 down 1 0 0/1 -3.02 1 63 -3.02 -3.02 RODH 0.330882353 -3.02 down 0.01 PTC;FVPTC FA;HN 32 31 publication 15087409 25 34 1554 8714 ABCC3 ATP-binding cassette, sub-family C (CFTR/MRP), member 3 affy_probe_2_Entrez 2 2 83 7.08 up 2 0 2/0 7.08 1 55 7.08 7.08 208161_s_at 208161_s_at ATP-binding cassette, sub-family C (CFTR/MRP), member 3 ABCC3 10.353 10.35 up 0.000350203 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1565 8714 ABCC3 ATP-binding cassette, sub-family C (CFTR/MRP), member 3 affy_probe_2_Entrez 2 2 83 7.08 up 2 0 2/0 7.08 1 55 7.08 7.08 209641_s_at 209641_s_at ATP-binding cassette, sub-family C (CFTR/MRP), member 3 ABCC3 7.076 7.08 up 6.91482E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 4 8 339 8714 ABCC3 ATP-binding cassette, sub-family C (CFTR/MRP), member 3 affy_probe_2_Entrez 2 2 83 7.08 up 2 0 2/0 7.08 1 55 7.08 7.08 38261_at 38261_at ATP-binding cassette, sub-family C (CFTR/MRP), member 3_ABCC3 ABCC3 up PTC FTC;Norm 6 22 provided by authors 15337802 25 34 1601 8795 TNFRSF10B tumor necrosis factor receptor superfamily, member 10b affy_probe_2_Entrez 1 1 55 2.54 up 1 0 1/0 2.54 1 55 2.54 2.54 209294_x_at 209294_x_at tumor necrosis factor receptor superfamily, member 10b TNFRSF10B 3.130 3.13 up 0.0056309 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1612 8795 TNFRSF10B tumor necrosis factor receptor superfamily, member 10b affy_probe_2_Entrez 1 1 55 2.54 up 1 0 1/0 2.54 1 55 2.54 2.54 209295_at 209295_at tumor necrosis factor receptor superfamily, member 10b TNFRSF10B 2.544 2.54 up 0.000148339 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1453 8796 SCEL sciellin Gene_symbol_2_NCBI_Entrez 2 2 48 19.73 up 2 0 2/0 9.865 2 48 15.03 4.70 Sciellin SCEL 3.91 15.03 up PTC Norm 16 16 publication 15735049 3 6 131 8796 SCEL sciellin clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 48 19.73 up 2 0 2/0 9.865 2 48 15.03 4.70 AF045941 AF045941 Sciellin SCEL 4.7 4.70 up yes 0.0002 PTC Norm 8 8 suppl. materials 11752453 24 33 1507 8828 NRP2 neuropilin 2 Gene_symbol_2_NCBI_Entrez 1 1 32 2.04 up 1 0 1/0 2.04 1 32 2.04 2.04 Neuropilin 2 NRP2 1.03 2.04 up PTC Norm 16 16 publication 15735049 25 34 1737 8842 PROM1 prominin 1 affy_probe_2_Entrez 1 1 55 -4.76 down 1 0 0/1 -4.76 1 55 -4.76 -4.76 204304_s_at 204304_s_at prominin 1 PROM1 -4.758 -4.76 down 0.019298975 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 4 8 328 8848 TSC22D1 TSC22 domain family, member 1 affy_probe_2_Entrez 2 2 63 2.5 up 2 0 2/0 2.5 1 35 2.50 2.50 39032_at 39032_at transforming growth factor beta-stimulated protein TSC-22_TSC22 TSC22 up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 487 8848 TSC22D1 TSC22 domain family, member 1 clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 63 2.5 up 2 0 2/0 2.5 1 35 2.50 2.50 AJ222700 AJ222700 TGF beta-stimulated clone 22 TSC-22 2.5 2.50 up PTC;FVPTC FA;HN 14 21 publication 15240595 10 16 733 8857 FCGBP Fc fragment of IgG binding protein affy_probe_2_Entrez 2 3 65 -10.62 down 3 0 0/3 -3.54 3 65 -3.22 -4.10 39014_at 39014_at Fc fragment of IgG binding protein FCGBP -3.22 -3.22 down yes PTC GT 8 6 publication 15515157 10 17 751 8857 FCGBP Fc fragment of IgG binding protein affy_probe_2_Entrez 2 3 65 -10.62 down 3 0 0/3 -3.54 3 65 -3.22 -4.10 39014_at 39014_at Fc fragment of IgG binding protein FCGBP -3.3 -3.30 down no PTC Norm 8 8 publication 15515157 7 12 431 8857 FCGBP Fc fragment of IgG binding protein clone_accession_2_NCBI_rna_accession_2_Entrez 2 3 65 -10.62 down 3 0 0/3 -3.54 3 65 -3.22 -4.10 D84239 D84239 IgG Fc-binding protein FC(y)BP 4.1 -4.10 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1602 8869 ST3GAL5 ST3 beta-galactoside alpha-2,3-sialyltransferase 5 affy_probe_2_Entrez 3 3 118 5.05 up 3 0 3/0 2.525 2 90 2.95 2.10 203217_s_at 203217_s_at sialyltransferase 9 (CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase; GM3 synthase) SIAT9 2.955 2.95 up 0.014813632 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 4 8 370 8869 ST3GAL5 ST3 beta-galactoside alpha-2,3-sialyltransferase 5 affy_probe_2_Entrez 3 3 118 5.05 up 3 0 3/0 2.525 2 90 2.95 2.10 34256_at 34256_at sialyltransferase 9 (CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase; GM3 synthase)_SIAT9 SIAT9 up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 528 8869 ST3GAL5 ST3 beta-galactoside alpha-2,3-sialyltransferase 5 clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 118 5.05 up 3 0 3/0 2.525 2 90 2.95 2.10 AB018356 AB018356 GM3 synthase SIATGM3S 2.1 2.10 up PTC;FVPTC FA;HN 14 21 publication 15240595 7 12 513 8892 EIF2B2 eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.3 down 1 0 0/1 -2.3 1 35 -2.30 -2.30 AF035280 AF035280 Translation initiation factor e1F-2B beta-subunit EIF2B2 2.3 -2.30 down PTC;FVPTC FA;HN 14 21 publication 15240595 10 16 738 8942 KYNU kynureninase (L-kynurenine hydrolase) affy_probe_2_Entrez 1 1 14 -4.29 down 1 0 0/1 -4.29 1 14 -4.29 -4.29 38492_at 38492_at Kynureninase (L-kynurenine hydrolase) KYNU -4.29 -4.29 down yes PTC GT 8 6 publication 15515157 7 12 523 8971 H1FX H1 histone family, member X clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.2 down 1 0 0/1 -2.2 1 35 -2.20 -2.20 D64142 D64142 Histone H1x H1FX 2.2 -2.20 down PTC;FVPTC FA;HN 14 21 publication 15240595 24 33 1490 8974 P4HA2 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide II Gene_symbol_2_NCBI_Entrez 4 4 131 11.27 up 4 0 4/0 3.75666666666667 3 103 4.50 2.93 Procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide II P4HA2 1.55 2.93 up PTC Norm 16 16 publication 15735049 25 34 1589 8974 P4HA2 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide II affy_probe_2_Entrez 4 4 131 11.27 up 4 0 4/0 3.75666666666667 3 103 4.50 2.93 202733_at 202733_at procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide II P4HA2 3.839 3.84 up 0.000172295 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 3 6 133 8974 P4HA2 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide II clone_accession_2_NCBI_rna_accession_2_Entrez 4 4 131 11.27 up 4 0 4/0 3.75666666666667 3 103 4.50 2.93 U90441 U90441 Prolyl 4-hydroxylase alpha (II) subunit P4HA2 4.5 4.50 up no 0.0001 PTC Norm 8 8 suppl. materials 11752453 4 8 362 8974 P4HA2 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide II affy_probe_2_Entrez 4 4 131 11.27 up 4 0 4/0 3.75666666666667 3 103 4.50 2.93 34390_at 34390_at procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide II_P4HA2 P4HA2 up PTC FTC;Norm 6 22 provided by authors 15337802 7 12 492 8991 SELENBP1 selenium binding protein 1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.5 down 1 0 0/1 -2.5 1 35 -2.50 -2.50 U29091 U29091 Human selenium-binding protein HSBP 2.5 -2.50 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1652 9060 PAPSS2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 affy_probe_2_Entrez 1 1 55 -6.95 down 1 0 0/1 -6.95 1 55 -6.95 -6.95 203059_s_at 203059_s_at 3'-phosphoadenosine 5'-phosphosulfate synthase 2 PAPSS2 -2.224 -2.22 down 0.007712264 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1762 9060 PAPSS2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 affy_probe_2_Entrez 1 1 55 -6.95 down 1 0 0/1 -6.95 1 55 -6.95 -6.95 203058_s_at 203058_s_at 3'-phosphoadenosine 5'-phosphosulfate synthase 2 PAPSS2 -6.893 -6.89 down 6.01927E-14 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1763 9060 PAPSS2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 affy_probe_2_Entrez 1 1 55 -6.95 down 1 0 0/1 -6.95 1 55 -6.95 -6.95 203060_s_at 203060_s_at 3'-phosphoadenosine 5'-phosphosulfate synthase 2 PAPSS2 -6.947 -6.95 down 6.02663E-07 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1476 9071 CLDN10 claudin 10 Gene_symbol_2_NCBI_Entrez 2 2 60 4.99 up 2 0 2/0 4.99 1 32 4.99 4.99 Claudin 10 CLDN10 2.32 4.99 up PTC Norm 16 16 publication 15735049 4 8 329 9071 CLDN10 claudin 10 affy_probe_2_Entrez 2 2 60 4.99 up 2 0 2/0 4.99 1 32 4.99 4.99 39579_at 39579_at claudin 10_CLDN10 CLDN10 up PTC FTC;Norm 6 22 provided by authors 15337802 25 34 1553 9076 CLDN1 claudin 1 affy_probe_2_Entrez 1 1 55 10.75 up 1 0 1/0 10.75 1 55 10.75 10.75 218182_s_at 218182_s_at claudin 1 CLDN1 10.754 10.75 up 0.002431061 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1527 9110 MTMR4 myotubularin related protein 4 Gene_symbol_2_NCBI_Entrez 1 1 32 -1.83 down 1 0 0/1 -1.83 1 32 -1.83 -1.83 Myotubularin-related protein 4 MTMR4 -0.875 -1.83 down PTC Norm 16 16 publication 15735049 16 24 1204 9144 SYNGR2 synaptogyrin 2 Gene_symbol_2_NCBI_Entrez 1 1 63 2.49 up 1 0 1/0 2.49 1 63 2.49 2.49 SYNGR2 2.493333333 2.49 up yes 0.01 PTC;FVPTC FA;HN 32 31 publication 15087409 25 34 1754 9162 DGKI diacylglycerol kinase, iota affy_probe_2_Entrez 1 1 55 -6.07 down 1 0 0/1 -6.07 1 55 -6.07 -6.07 206806_at 206806_at diacylglycerol kinase, iota DGKI -6.070 -6.07 down 8.56779E-08 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1524 9166 EBAG9 estrogen receptor binding site associated, antigen, 9 Gene_symbol_2_NCBI_Entrez 1 1 32 -1.57 down 1 0 0/1 -1.57 1 32 -1.57 -1.57 Estrogen receptor binding site associated antigen 9 EBAG9 -0.65 -1.57 down PTC Norm 16 16 publication 15735049 10 16 718 9168 TMSB10 thymosin, beta 10 affy_probe_2_Entrez 1 1 14 5.09 up 1 0 1/0 5.09 1 14 5.09 5.09 31481_s_at 31481_s_at Thymosin, beta 10 TMSB10 5.09 5.09 up yes PTC GT 8 6 publication 15515157 7 12 489 9232 PTTG1 pituitary tumor-transforming 1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.5 down 1 0 0/1 -2.5 1 35 -2.50 -2.50 AA203476 AA203476 Pituitary tumor-transforming gene PTTG1 2.5 -2.50 down PTC;FVPTC FA;HN 14 21 publication 15240595 4 8 350 9249 DHRS3 dehydrogenase/reductase (SDR family) member 3 affy_probe_2_Entrez 1 1 28 0 up 1 0 1/0 0 0 0 0 0 40782_at 40782_at short-chain dehydrogenase/reductase 1_SDR1 SDR1 up PTC FTC;Norm 6 22 provided by authors 15337802 25 34 1694 9252 RPS6KA5 ribosomal protein S6 kinase, 90kDa, polypeptide 5 affy_probe_2_Entrez 1 1 55 -2.99 down 1 0 0/1 -2.99 1 55 -2.99 -2.99 204633_s_at 204633_s_at ribosomal protein S6 kinase, 90kDa, polypeptide 5 RPS6KA5 -2.992 -2.99 down 8.9986E-07 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 16 24 1241 9352 TXNL1 thioredoxin-like 1 Gene_symbol_2_NCBI_Synonym_2_Entrez 1 1 63 -2.09 down 1 0 0/1 -2.09 1 63 -2.09 -2.09 TXNL 0.478991597 -2.09 down 0.01 PTC;FVPTC FA;HN 32 31 publication 15087409 7 12 520 9435 CHST2 carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 2.2 up 1 0 1/0 2.2 1 35 2.20 2.20 AB014679 AB014679 N-Acetylglucosamine-6-O-sulfotransferase GN6ST 2.2 2.20 up PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1630 9448 MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 affy_probe_2_Entrez 1 1 55 2.13 up 1 0 1/0 2.13 1 55 2.13 2.13 218181_s_at 218181_s_at mitogen-activated protein kinase kinase kinase kinase 4 MAP4K4 2.130 2.13 up 0.001822074 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 2 4 102 9510 ADAMTS1 a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 2 -5.8 down 1 0 0/1 -5.8 1 2 -5.80 -5.80 NM_006988 NM_006988 A disintegrin-like and metalloprotease with thrombospondin type 1 motif ADAMTS1 5.8 -5.80 down PCL Norm 1 1 publication 15785240 24 33 1522 9515 STXBP5L syntaxin binding protein 5-like Gene_symbol_2_NCBI_Synonym_2_Entrez 1 1 32 -1.5 down 1 0 0/1 -1.5 1 32 -1.50 -1.50 Tomosyn-like KIAA1006 -0.585 -1.50 down PTC Norm 16 16 publication 15735049 12 19 842 9518 GDF15 growth differentiation factor 15 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 21 8.6 up 1 0 1/0 8.6 1 21 8.60 8.60 AF019770 AF019770 MIC-1 8.6 8.60 up PTC Norm 18 3 publication 12538453 7 12 521 9524 GPSN2 glycoprotein, synaptic 2 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.2 down 1 0 0/1 -2.2 1 35 -2.20 -2.20 AF038958 AF038958 Synaptic glycoprotein 2 SC2 2.2 -2.20 down PTC;FVPTC FA;HN 14 21 publication 15240595 10 17 748 9568 GPR51 G protein-coupled receptor 51 affy_probe_2_Entrez 3 3 83 17.71 up 3 0 3/0 5.90333333333333 3 83 8.26 4.00 33764_at 33764_at G protein-coupled receptor 51 GPR51 8.26 8.26 up no PTC Norm 8 8 publication 15515157 24 33 1472 9568 GPR51 G protein-coupled receptor 51 Gene_symbol_2_NCBI_Entrez 3 3 83 17.71 up 3 0 3/0 5.90333333333333 3 83 8.26 4.00 G protein-coupled receptor 51 GPR51 2.445 5.45 up PTC Norm 16 16 publication 15735049 7 12 432 9568 GPR51 G protein-coupled receptor 51 clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 83 17.71 up 3 0 3/0 5.90333333333333 3 83 8.26 4.00 AF056085 AF056085 G Protein-coupled receptor GABABR2 4 4.00 up PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1688 9592 IER2 immediate early response 2 affy_probe_2_Entrez 1 1 55 -2.89 down 1 0 0/1 -2.89 1 55 -2.89 -2.89 202081_at 202081_at immediate early response 2 IER2 -2.894 -2.89 down 0.038446886 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 17 30 1293 9607 CART cocaine- and amphetamine-regulated transcript tag_2_refseq_or_mgc_2_Entrez 2 2 37 -3.9 down 2 0 0/2 -3.9 1 35 -3.90 -3.90 TGTGACGCCG TGTGACGCCG down PTC FTC 1 1 publication 11076659 7 12 436 9607 CART cocaine- and amphetamine-regulated transcript clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 37 -3.9 down 2 0 0/2 -3.9 1 35 -3.90 -3.90 U20325 U20325 Cocaine-and amphetamine-regulated transcript hCART 3.9 -3.90 down PTC;FVPTC FA;HN 14 21 publication 15240595 24 33 1517 9641 IKBKE inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon Gene_symbol_2_NCBI_Entrez 1 1 32 1.24 up 1 0 1/0 1.24 1 32 1.24 1.24 Inhibitor of light polypeptide gene enhancer in B-cells, kinase epsilon IKBKE 0.315 1.24 up PTC Norm 16 16 publication 15735049 25 34 1631 9695 EDEM1 ER degradation enhancer, mannosidase alpha-like 1 affy_probe_2_Entrez 1 1 55 2.13 up 1 0 1/0 2.13 1 55 2.13 2.13 203279_at 203279_at ER degradation enhancer, mannosidase alpha-like 1 EDEM1 2.128 2.13 up 0.007204821 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1676 9697 TRAM2 translocation associated membrane protein 2 affy_probe_2_Entrez 1 1 55 -2.72 down 1 0 0/1 -2.72 1 55 -2.72 -2.72 202368_s_at 202368_s_at translocation associated membrane protein 2 TRAM2 -2.722 -2.72 down 0.000853362 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 476 9844 ELMO1 engulfment and cell motility 1 (ced-12 homolog, C. elegans) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.7 down 1 0 0/1 -2.7 1 35 -2.70 -2.70 D87457 D87457 KIAA0281 gene KIAA0281 2.7 -2.70 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1709 9882 TBC1D4 TBC1 domain family, member 4 affy_probe_2_Entrez 1 1 55 -3.69 down 1 0 0/1 -3.69 1 55 -3.69 -3.69 203387_s_at 203387_s_at TBC1 domain family, member 4 TBC1D4 -3.389 -3.39 down 0.001948548 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1721 9882 TBC1D4 TBC1 domain family, member 4 affy_probe_2_Entrez 1 1 55 -3.69 down 1 0 0/1 -3.69 1 55 -3.69 -3.69 203386_at 203386_at TBC1 domain family, member 4 TBC1D4 -3.694 -3.69 down 0.008659612 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1491 9902 MRC2 mannose receptor, C type 2 Gene_symbol_2_NCBI_Entrez 1 1 32 2.88 up 1 0 1/0 2.88 1 32 2.88 2.88 Mannose receptor, C type 2 MRC2 1.525 2.88 up PTC Norm 16 16 publication 15735049 25 34 1728 9914 KIAA0703 KIAA0703 gene product affy_probe_2_Entrez 1 1 55 -4.05 down 1 0 0/1 -4.05 1 55 -4.05 -4.05 206043_s_at 206043_s_at KIAA0703 gene product KIAA0703 -4.054 -4.05 down 1.31194E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1752 9935 MAFB v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian) affy_probe_2_Entrez 1 1 55 -5.87 down 1 0 0/1 -5.87 1 55 -5.87 -5.87 218559_s_at 218559_s_at v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian) MAFB -5.871 -5.87 down 0.041986197 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1497 9961 MVP major vault protein Gene_symbol_2_NCBI_Entrez 2 2 87 5.82 up 2 0 2/0 2.91 2 87 3.24 2.58 Major vault protein MVP 1.37 2.58 up PTC Norm 16 16 publication 15735049 25 34 1598 9961 MVP major vault protein affy_probe_2_Entrez 2 2 87 5.82 up 2 0 2/0 2.91 2 87 3.24 2.58 202180_s_at 202180_s_at major vault protein MVP 3.239 3.24 up 0.011233219 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1616 9969 THRAP1 thyroid hormone receptor associated protein 1 affy_probe_2_Entrez 1 1 55 2.46 up 1 0 1/0 2.46 1 55 2.46 2.46 201987_at 201987_at thyroid hormone receptor associated protein 1 THRAP1 2.463 2.46 up 0.043812497 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1718 10098 TSPAN5 tetraspanin 5 affy_probe_2_Entrez 1 1 55 -3.61 down 1 0 0/1 -3.61 1 55 -3.61 -3.61 209890_at 209890_at transmembrane 4 superfamily member 9 TM4SF9 -3.614 -3.61 down 0.003217913 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 534 10105 PPIF peptidylprolyl isomerase F (cyclophilin F) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.1 down 1 0 0/1 -2.1 1 35 -2.10 -2.10 M80254 M80254 Cyclophilin isoform CYP3 2.1 -2.10 down PTC;FVPTC FA;HN 14 21 publication 15240595 16 24 1238 10144 FAM13A1 family with sequence similarity 13, member A1 Gene_symbol_2_NCBI_Entrez 1 1 63 -1.9 down 1 0 0/1 -1.9 1 63 -1.90 -1.90 FAM13A1 0.525925926 -1.90 down yes 0.02 PTC;FVPTC FA;HN 32 31 publication 15087409 7 12 447 10154 PLXNC1 plexin C1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 3.3 up 1 0 1/0 3.3 1 35 3.30 3.30 AF030339 AF030339 Virally, encoded semaphorin protein receptor PLXN-C1 3.3 3.30 up PTC;FVPTC FA;HN 14 21 publication 15240595 24 33 1456 10158 PDZK1IP1 PDZK1 interacting protein 1 Gene_symbol_2_NCBI_Synonym_2_Entrez 1 1 32 13.13 up 1 0 1/0 13.13 1 32 13.13 13.13 Membrane-associated protein 17 MAP17 3.715 13.13 up PTC Norm 16 16 publication 15735049 24 33 1540 10166 SLC25A15 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 Gene_symbol_2_NCBI_Entrez 1 1 32 -3.86 down 1 0 0/1 -3.86 1 32 -3.86 -3.86 Solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 SLC25A15 -1.95 -3.86 down PTC Norm 16 16 publication 15735049 24 33 1477 10205 EVA1 epithelial V-like antigen 1 Gene_symbol_2_NCBI_Entrez 2 2 87 9.78 up 2 0 2/0 4.89 2 87 4.91 4.87 Epithelial V-like antigen 1 EVA1 2.285 4.87 up PTC Norm 16 16 publication 15735049 25 34 1552 10205 EVA1 epithelial V-like antigen 1 affy_probe_2_Entrez 2 2 87 9.78 up 2 0 2/0 4.89 2 87 4.91 4.87 203779_s_at 203779_s_at epithelial V-like antigen 1 EVA1 13.949 13.95 up 2.43333E-06 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1578 10205 EVA1 epithelial V-like antigen 1 affy_probe_2_Entrez 2 2 87 9.78 up 2 0 2/0 4.89 2 87 4.91 4.87 203780_at 203780_at epithelial V-like antigen 1 EVA1 4.910 4.91 up 4.99938E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1523 10241 NDP52 nuclear domain 10 protein Gene_symbol_2_NCBI_Entrez 1 1 32 -1.53 down 1 0 0/1 -1.53 1 32 -1.53 -1.53 Nuclear domain 10 protein NDP52 -0.61 -1.53 down PTC Norm 16 16 publication 15735049 16 24 1225 10282 BET1 BET1 homolog (S. cerevisiae) Gene_symbol_2_NCBI_Entrez 1 1 63 -1.68 down 1 0 0/1 -1.68 1 63 -1.68 -1.68 BET1 0.594202899 -1.68 down 0.04 PTC;FVPTC FA;HN 32 31 publication 15087409 3 6 144 10370 CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 16 -2.7 down 1 0 0/1 -2.7 1 16 -2.70 -2.70 U65093 U65093 Cbp/p300-interacting transactivator 2 CITED2 -2.7 -2.70 down no 0.0019 PTC Norm 8 8 suppl. materials 11752453 17 28 1284 10376 K-ALPHA-1 tubulin, alpha, ubiquitous tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 down 1 0 0/1 0 0 0 0 0 TGTACCTGTA TGTACCTGTA down PTC ATC 1 1 publication 11076659 25 34 1640 10397 NDRG1 N-myc downstream regulated gene 1 affy_probe_2_Entrez 1 1 55 -2.07 down 1 0 0/1 -2.07 1 55 -2.07 -2.07 200632_s_at 200632_s_at N-myc downstream regulated gene 1 NDRG1 -2.068 -2.07 down 0.041656945 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 473 10404 PGCP plasma glutamate carboxypeptidase clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.7 down 1 0 0/1 -2.7 1 35 -2.70 -2.70 W28330 W28330 Plasma glutamate carboxypeptidase PGCP 2.7 -2.70 down PTC;FVPTC FA;HN 14 21 publication 15240595 7 12 479 10406 WFDC2 WAP four-disulfide core domain 2 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.6 down 1 0 0/1 -2.6 1 35 -2.60 -2.60 X63187 X63187 Extracellular proteinase inhibitor homologue HE4 2.6 -2.60 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1593 10458 BAIAP2 BAI1-associated protein 2 affy_probe_2_Entrez 1 1 55 3.4 up 1 0 1/0 3.4 1 55 3.40 3.40 209502_s_at 209502_s_at BAI1-associated protein 2 BAIAP2 3.398 3.40 up 0.018405073 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1455 10551 AGR2 anterior gradient 2 homolog (Xenopus laevis) Gene_symbol_2_NCBI_Entrez 1 1 32 13.93 up 1 0 1/0 13.93 1 32 13.93 13.93 Anterior gradient 2 homologue (Xenopus laevis) AGR2 3.8 13.93 up PTC Norm 16 16 publication 15735049 24 33 1451 10568 SLC34A2 solute carrier family 34 (sodium phosphate), member 2 Gene_symbol_2_NCBI_Entrez 1 1 32 18.57 up 1 0 1/0 18.57 1 32 18.57 18.57 Solute carrier family 34 (sodium phosphate), member 2 SLC34A2 4.215 18.57 up PTC Norm 16 16 publication 15735049 24 33 1496 10577 NPC2 Niemann-Pick disease, type C2 Gene_symbol_2_NCBI_Entrez 2 2 87 5.18 up 2 0 2/0 2.59 2 87 2.64 2.54 Niemann-Pick disease, type C2 NPC2 1.4 2.64 up PTC Norm 16 16 publication 15735049 25 34 1613 10577 NPC2 Niemann-Pick disease, type C2 affy_probe_2_Entrez 2 2 87 5.18 up 2 0 2/0 2.59 2 87 2.64 2.54 200701_at 200701_at Niemann-Pick disease, type C2 NPC2 2.536 2.54 up 5.9102E-08 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 516 10615 SPAG5 sperm associated antigen 5 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.3 down 1 0 0/1 -2.3 1 35 -2.30 -2.30 AF063308 AF063308 Associated with mitotic spindle apparatus DEEPEST 2.3 -2.30 down PTC;FVPTC FA;HN 14 21 publication 15240595 14 21 996 10638 SPHAR S-phase response (cyclin-related) Gene_symbol_2_NCBI_Entrez 1 1 14 0 up 1 0 1/0 0 0 0 0 0 SPHAR gene for cyclin-related protein SPHAR up PTC Norm 7 7 publication The gene name for this entry was determined manually from the description 15041723 2 4 99 10658 CUGBP1 CUG triplet repeat, RNA binding protein 1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 2 -7.6 down 1 0 0/1 -7.6 1 2 -7.60 -7.60 NM_006560 NM_006560 CUG triplet repeat, RNA binding protein 1 CUGBP1 7.6 -7.60 down PCL Norm 1 1 publication 15785240 24 33 1530 10732 TCFL5 transcription factor-like 5 (basic helix-loop-helix) Gene_symbol_2_NCBI_Entrez 1 1 32 -2.01 down 1 0 0/1 -2.01 1 32 -2.01 -2.01 Transcription factor-like 5 (basic helix-loop-helix) TCFL5 -1.01 -2.01 down PTC Norm 16 16 publication 15735049 25 34 1641 10778 ZNF271 zinc finger protein 271 affy_probe_2_Entrez 1 1 55 -2.07 down 1 0 0/1 -2.07 1 55 -2.07 -2.07 211009_s_at 211009_s_at zinc finger protein 271 ZNF271 -2.068 -2.07 down 0.000422955 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 3 6 140 10875 FGL2 fibrinogen-like 2 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 16 -2.3 down 1 0 0/1 -2.3 1 16 -2.30 -2.30 Z36531 Z36531 Fibrinogen-like protein (pT49 protein) FGL2 -2.3 -2.30 down no 0.0004 PTC Norm 8 8 suppl. materials 11752453 25 34 1739 10894 XLKD1 extracellular link domain containing 1 affy_probe_2_Entrez 1 1 55 -5.96 down 1 0 0/1 -5.96 1 55 -5.96 -5.96 220037_s_at 220037_s_at extracellular link domain containing 1 XLKD1 -4.832 -4.83 down 7.11835E-06 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1753 10894 XLKD1 extracellular link domain containing 1 affy_probe_2_Entrez 1 1 55 -5.96 down 1 0 0/1 -5.96 1 55 -5.96 -5.96 219059_s_at 219059_s_at extracellular link domain containing 1 XLKD1 -5.956 -5.96 down 1.27637E-09 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1603 10963 STIP1 stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein) affy_probe_2_Entrez 1 1 55 2.95 up 1 0 1/0 2.95 1 55 2.95 2.95 213330_s_at 213330_s_at stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein) STIP1 2.954 2.95 up 0.028822821 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1624 10973 ASCC3 activating signal cointegrator 1 complex subunit 3 affy_probe_2_Entrez 1 1 55 2.27 up 1 0 1/0 2.27 1 55 2.27 2.27 212815_at 212815_at activating signal cointegrator 1 complex subunit 3 ASCC3 2.274 2.27 up 0.029602255 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 14 21 974 11004 KIF2C kinesin family member 2C clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 3.2 up 1 0 1/0 3.2 1 14 3.20 3.20 AA400476 AA400476 Mitotic centromere-associated kinesin 3.2 3.20 up PTC Norm 7 7 publication 15041723 10 16 727 11039 SMA4 SMA4 affy_probe_2_Entrez 1 1 14 -2.74 down 1 0 0/1 -2.74 1 14 -2.74 -2.74 32921_at 32921_at SMA4 SMA4 -2.74 -2.74 down yes PTC GT 8 6 publication 15515157 24 33 1478 11098 PRSS23 protease, serine, 23 Gene_symbol_2_NCBI_Synonym_2_Entrez 3 3 83 14.92 up 3 0 3/0 4.97333333333333 3 83 6.70 3.50 Protease, serine, 23 SPUVE 2.24 4.72 up PTC Norm 16 16 publication 15735049 3 6 126 11098 PRSS23 protease, serine, 23 clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 83 14.92 up 3 0 3/0 4.97333333333333 3 83 6.70 3.50 AF015287 AF015287 Serine protease SPUVE 6.7 6.70 up no 0.0002 PTC Norm 8 8 suppl. materials 11752453 7 12 440 11098 PRSS23 protease, serine, 23 clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 83 14.92 up 3 0 3/0 4.97333333333333 3 83 6.70 3.50 AF015287 AF015287 Signal sequence for secretion by HUVEC SIG13 3.5 3.50 up PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1622 11177 BAZ1A bromodomain adjacent to zinc finger domain, 1A affy_probe_2_Entrez 1 1 55 2.31 up 1 0 1/0 2.31 1 55 2.31 2.31 217986_s_at 217986_s_at bromodomain adjacent to zinc finger domain, 1A BAZ1A 2.305 2.31 up 0.022075114 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 16 24 1221 11183 MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5 Gene_symbol_2_NCBI_Entrez 1 1 63 -1.64 down 1 0 0/1 -1.64 1 63 -1.64 -1.64 MAP4K5 0.610062893 -1.64 down 0.04 PTC;FVPTC FA;HN 32 31 publication 15087409 24 33 1514 11237 RNF24 ring finger protein 24 Gene_symbol_2_NCBI_Entrez 1 1 32 1.55 up 1 0 1/0 1.55 1 32 1.55 1.55 Ring finger protein 24 RNF24 0.63 1.55 up PTC Norm 16 16 publication 15735049 25 34 1623 11275 KLHL2 kelch-like 2, Mayven (Drosophila) affy_probe_2_Entrez 1 1 55 2.3 up 1 0 1/0 2.3 1 55 2.30 2.30 219157_at 219157_at kelch-like 2, Mayven (Drosophila) KLHL2 2.305 2.30 up 0.005690622 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1561 11322 EVER1 epidermodysplasia verruciformis 1 affy_probe_2_Entrez 1 1 55 8.08 up 1 0 1/0 8.08 1 55 8.08 8.08 204328_at 204328_at epidermodysplasia verruciformis 1 EVER1 8.079 8.08 up 3.21272E-07 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1672 22848 AAK1 AP2 associated kinase 1 affy_probe_2_Entrez 1 1 55 -2.62 down 1 0 0/1 -2.62 1 55 -2.62 -2.62 205434_s_at 205434_s_at AP2 associated kinase 1 AAK1 -2.622 -2.62 down 0.014039369 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1703 22915 MMRN1 multimerin 1 affy_probe_2_Entrez 1 1 55 -3.22 down 1 0 0/1 -3.22 1 55 -3.22 -3.22 205612_at 205612_at multimerin 1 MMRN1 -3.219 -3.22 down 9.8325E-07 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1653 22921 MSRB2 methionine sulfoxide reductase B2 affy_probe_2_Entrez 1 1 55 -2.24 down 1 0 0/1 -2.24 1 55 -2.24 -2.24 218773_s_at 218773_s_at methionine sulfoxide reductase B MSRB -2.237 -2.24 down 0.001408171 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1719 22925 PLA2R1 phospholipase A2 receptor 1, 180kDa affy_probe_2_Entrez 2 2 90 -7.1 down 2 0 0/2 -3.55 2 90 -2.50 -4.60 210194_at 210194_at phospholipase A2 receptor 1, 180kDa PLA2R1 -3.657 -3.66 down 0.000561768 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1731 22925 PLA2R1 phospholipase A2 receptor 1, 180kDa affy_probe_2_Entrez 2 2 90 -7.1 down 2 0 0/2 -3.55 2 90 -2.50 -4.60 207415_at 207415_at phospholipase A2 receptor 1, 180kDa PLA2R1 -4.600 -4.60 down 1.04937E-09 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 496 22925 PLA2R1 phospholipase A2 receptor 1, 180kDa clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 90 -7.1 down 2 0 0/2 -3.55 2 90 -2.50 -4.60 U17034 U17034 PLA2 receptor precursor PLA2R 2.5 -2.50 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1680 22941 SHANK2 SH3 and multiple ankyrin repeat domains 2 affy_probe_2_Entrez 1 1 55 -5.01 down 1 0 0/1 -5.01 1 55 -5.01 -5.01 213307_at 213307_at SH3 and multiple ankyrin repeat domains 2 SHANK2 -2.774 -2.77 down 0.000303351 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1742 22941 SHANK2 SH3 and multiple ankyrin repeat domains 2 affy_probe_2_Entrez 1 1 55 -5.01 down 1 0 0/1 -5.01 1 55 -5.01 -5.01 213308_at 213308_at SH3 and multiple ankyrin repeat domains 2 SHANK2 -5.010 -5.01 down 3.32102E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1518 22976 PAXIP1 PAX interacting (with transcription-activation domain) protein 1 Gene_symbol_2_NCBI_Synonym_2_Entrez 1 1 32 -1.38 down 1 0 0/1 -1.38 1 32 -1.38 -1.38 PAX transcription activation domain interacting protein 1-like PAXIP1L -0.465 -1.38 down PTC Norm 16 16 publication 15735049 25 34 1657 23005 MAPKBP1 mitogen activated protein kinase binding protein 1 affy_probe_2_Entrez 1 1 55 -2.27 down 1 0 0/1 -2.27 1 55 -2.27 -2.27 213394_at 213394_at likely ortholog of mouse mitogen activated protein kinase binding proten 1 MAPKBP1 -2.274 -2.27 down 0.015438141 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1705 23007 PLCL3 phospholipase C-like 3 affy_probe_2_Entrez 1 1 55 -3.3 down 1 0 0/1 -3.3 1 55 -3.30 -3.30 214745_at 214745_at phospholipase C-like 3 PLCL3 -3.296 -3.30 down 0.009969013 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1583 23043 TNIK TRAF2 and NCK interacting kinase affy_probe_2_Entrez 1 1 55 3.16 up 1 0 1/0 3.16 1 55 3.16 3.16 211828_s_at 211828_s_at TRAF2 and NCK interacting kinase TNIK 4.317 4.32 up 7.49126E-06 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1600 23043 TNIK TRAF2 and NCK interacting kinase affy_probe_2_Entrez 1 1 55 3.16 up 1 0 1/0 3.16 1 55 3.16 3.16 213107_at 213107_at TRAF2 and NCK interacting kinase TNIK 3.158 3.16 up 0.001257775 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1508 23052 KIAA0830 KIAA0830 protein Gene_symbol_2_NCBI_Entrez 1 1 32 2.01 up 1 0 1/0 2.01 1 32 2.01 2.01 KIAA0830 protein KIAA0830 1.01 2.01 up PTC Norm 16 16 publication 15735049 16 24 1235 23171 GPD1L glycerol-3-phosphate dehydrogenase 1-like Gene_symbol_2_NCBI_Synonym_2_Entrez 1 1 63 -1.88 down 1 0 0/1 -1.88 1 63 -1.88 -1.88 KIAA0089 0.531468531 -1.88 down 0.03 PTC;FVPTC FA;HN 32 31 publication 15087409 25 34 1650 23177 KIAA0582 KIAA0582 affy_probe_2_Entrez 1 1 55 -2.21 down 1 0 0/1 -2.21 1 55 -2.21 -2.21 212677_s_at 212677_s_at KIAA0582 KIAA0582 -2.211 -2.21 down 0.019167189 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1470 23220 DTX4 deltex 4 homolog (Drosophila) Gene_symbol_2_NCBI_Synonym_2_Entrez 3 3 76 9.62 up 3 0 3/0 4.81 2 48 5.62 4.00 KIAA0937 protein KIAA0937 2.49 5.62 up PTC Norm 16 16 publication 15735049 3 6 134 23220 DTX4 deltex 4 homolog (Drosophila) clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 76 9.62 up 3 0 3/0 4.81 2 48 5.62 4.00 AB023154 AB023154 KIAA0937 KIAA0937 4 4.00 up no 0.0001 PTC Norm 8 8 suppl. materials 11752453 4 8 333 23220 DTX4 deltex 4 homolog (Drosophila) affy_probe_2_Entrez 3 3 76 9.62 up 3 0 3/0 4.81 2 48 5.62 4.00 35369_at 35369_at macrophage expressed gene 1_MPEG1 MPEG1 up PTC FTC;Norm 6 22 provided by authors 15337802 25 34 1596 23250 ATP11A ATPase, Class VI, type 11A affy_probe_2_Entrez 1 1 55 3.3 up 1 0 1/0 3.3 1 55 3.30 3.30 216488_s_at 216488_s_at ATPase, Class VI, type 11A ATP11A 3.296 3.30 up 0.037241031 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 16 24 1217 23272 RAP140 retinoblastoma-associated protein 140 Gene_symbol_2_NCBI_Entrez 1 1 63 -1.6 down 1 0 0/1 -1.6 1 63 -1.60 -1.60 RAP140 0.625 -1.60 down 0.01 PTC;FVPTC FA;HN 32 31 publication 15087409 25 34 1734 23345 SYNE1 spectrin repeat containing, nuclear envelope 1 affy_probe_2_Entrez 1 1 55 -4.63 down 1 0 0/1 -4.63 1 55 -4.63 -4.63 215350_at 215350_at spectrin repeat containing, nuclear envelope 1 SYNE1 -4.629 -4.63 down 2.471E-09 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1608 23348 DOCK9 dedicator of cytokinesis 9 affy_probe_2_Entrez 2 2 83 2.74 up 2 0 2/0 2.74 1 55 2.74 2.74 212538_at 212538_at dedicator of cytokinesis 9 DOCK9 2.740 2.74 up 0.00395343 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 4 8 353 23348 DOCK9 dedicator of cytokinesis 9 affy_probe_2_Entrez 2 2 83 2.74 up 2 0 2/0 2.74 1 55 2.74 2.74 37571_at 37571_at zizimin1_zizimin1 zizimin1 up PTC FTC;Norm 6 22 provided by authors 15337802 24 33 1485 23362 PSD3 pleckstrin and Sec7 domain containing 3 Gene_symbol_2_NCBI_Synonym_2_Entrez 3 3 122 12.67 up 3 0 3/0 4.22333333333333 3 122 5.50 3.40 Hypothetical protein DKFZp761K1423 DKFZp761K1423 1.915 3.77 up PTC Norm 16 16 publication 15735049 25 34 1560 23362 PSD3 pleckstrin and Sec7 domain containing 3 affy_probe_2_Entrez 3 3 122 12.67 up 3 0 3/0 4.22333333333333 3 122 5.50 3.40 203354_s_at 203354_s_at pleckstrin and Sec7 domain containing 3 PSD3 8.253 8.25 up 0.007461741 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1572 23362 PSD3 pleckstrin and Sec7 domain containing 3 affy_probe_2_Entrez 3 3 122 12.67 up 3 0 3/0 4.22333333333333 3 122 5.50 3.40 218613_at 218613_at pleckstrin and Sec7 domain containing 3 PSD3 5.726 5.73 up 1.1507E-08 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1575 23362 PSD3 pleckstrin and Sec7 domain containing 3 affy_probe_2_Entrez 3 3 122 12.67 up 3 0 3/0 4.22333333333333 3 122 5.50 3.40 203355_s_at 203355_s_at pleckstrin and Sec7 domain containing 3 PSD3 5.503 5.50 up 2.71768E-07 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 444 23362 PSD3 pleckstrin and Sec7 domain containing 3 clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 122 12.67 up 3 0 3/0 4.22333333333333 3 122 5.50 3.40 AB023159 AB023159 KJAA0942 protein KIAA0942 3.4 3.40 up PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1599 23381 EST1B Est1p-like protein B affy_probe_2_Entrez 1 1 55 3.17 up 1 0 1/0 3.17 1 55 3.17 3.17 212147_at 212147_at Est1p-like protein B EST1B 3.172 3.17 up 0.007667858 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1745 23414 ZFPM2 zinc finger protein, multitype 2 affy_probe_2_Entrez 1 1 55 -5.16 down 1 0 0/1 -5.16 1 55 -5.16 -5.16 219778_at 219778_at zinc finger protein, multitype 2 ZFPM2 -5.161 -5.16 down 0.00053732 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 12 19 853 23468 CBX5 chromobox homolog 5 (HP1 alpha homolog, Drosophila) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 21 -2.04 down 1 0 0/1 -2.04 1 21 -2.04 -2.04 L07515 L07515 HP1-alpha 0.49 -2.04 down PTC Norm 18 3 publication 12538453 16 24 1243 23516 SLC39A14 solute carrier family 39 (zinc transporter), member 14 Gene_symbol_2_NCBI_Synonym_2_Entrez 2 2 98 -4.84 down 2 0 0/2 -2.42 2 98 -2.24 -2.60 KIAA0062 0.446601942 -2.24 down 0.001 PTC;FVPTC FA;HN 32 31 publication 15087409 7 12 482 23516 SLC39A14 solute carrier family 39 (zinc transporter), member 14 clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 98 -4.84 down 2 0 0/2 -2.42 2 98 -2.24 -2.60 D31887 D31887 K1AA0062 gene KIAA0062 2.6 -2.60 down PTC;FVPTC FA;HN 14 21 publication 15240595 24 33 1520 23609 MKRN2 makorin, ring finger protein, 2 Gene_symbol_2_NCBI_Entrez 1 1 32 -1.44 down 1 0 0/1 -1.44 1 32 -1.44 -1.44 Makorin, ring finger protein, 2 MKRN2 -0.525 -1.44 down PTC Norm 16 16 publication 15735049 7 12 527 23635 SSBP2 single-stranded DNA binding protein 2 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 2.1 up 1 0 1/0 2.1 1 35 2.10 2.10 AL080076 AL080076 Single-strand DNA-binding protein HSPC116 2.1 2.10 up PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1716 23645 PPP1R15A protein phosphatase 1, regulatory (inhibitor) subunit 15A affy_probe_2_Entrez 1 1 55 -3.57 down 1 0 0/1 -3.57 1 55 -3.57 -3.57 37028_at 37028_at protein phosphatase 1, regulatory (inhibitor) subunit 15A PPP1R15A -3.571 -3.57 down 0.002055442 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 4 8 361 23646 PLD3 phospholipase D family, member 3 affy_probe_2_Entrez 1 1 28 0 up 1 0 1/0 0 0 0 0 0 36151_at 36151_at phospholipase D3_PLD3 PLD3 up PTC FTC;Norm 6 22 provided by authors 15337802 14 21 968 23649 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 37 up 1 0 1/0 37 1 14 37.00 37.00 AA486289 AA486289 DNA polymerase 37 37.00 up PTC Norm 7 7 publication 15041723 24 33 1492 23767 FLRT3 fibronectin leucine rich transmembrane protein 3 Gene_symbol_2_NCBI_Entrez 1 1 32 2.85 up 1 0 1/0 2.85 1 32 2.85 2.85 Fibronectin leucine-rich transmembrane protein 3 FLRT3 1.51 2.85 up PTC Norm 16 16 publication 15735049 24 33 1458 25797 QPCT glutaminyl-peptide cyclotransferase (glutaminyl cyclase) Gene_symbol_2_NCBI_Entrez 3 3 122 26.05 up 3 0 3/0 8.68333333333333 3 122 11.67 4.20 Glutaminyl-peptide cyclotransferase (glutaminyl cyclase) QPCT 3.545 11.67 up PTC Norm 16 16 publication 15735049 25 34 1556 25797 QPCT glutaminyl-peptide cyclotransferase (glutaminyl cyclase) affy_probe_2_Entrez 3 3 122 26.05 up 3 0 3/0 8.68333333333333 3 122 11.67 4.20 205174_s_at 205174_s_at glutaminyl-peptide cyclotransferase (glutaminyl cyclase) QPCT 10.178 10.18 up 1.64137E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 429 25797 QPCT glutaminyl-peptide cyclotransferase (glutaminyl cyclase) clone_accession_2_NCBI_rna_accession_2_Entrez 3 3 122 26.05 up 3 0 3/0 8.68333333333333 3 122 11.67 4.20 X71125 X71125 Glutamine cyclotransferase GCT 4.2 4.20 up PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1714 25802 LMOD1 leiomodin 1 (smooth muscle) affy_probe_2_Entrez 1 1 55 -8.46 down 1 0 0/1 -8.46 1 55 -8.46 -8.46 211562_s_at 211562_s_at leiomodin 1 (smooth muscle) LMOD1 -3.518 -3.52 down 0.015264131 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1770 25802 LMOD1 leiomodin 1 (smooth muscle) affy_probe_2_Entrez 1 1 55 -8.46 down 1 0 0/1 -8.46 1 55 -8.46 -8.46 203766_s_at 203766_s_at leiomodin 1 (smooth muscle) LMOD1 -8.458 -8.46 down 7.9874E-07 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1682 25890 ABI3BP ABI gene family, member 3 (NESH) binding protein affy_probe_2_Entrez 1 1 55 -2.8 down 1 0 0/1 -2.8 1 55 -2.80 -2.80 220518_at 220518_at target of Nesh-SH3 TARSH -2.800 -2.80 down 0.006377425 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1544 25928 SOSTDC1 sclerostin domain containing 1 Gene_symbol_2_NCBI_Entrez 1 1 32 -10.3 down 1 0 0/1 -10.3 1 32 -10.30 -10.30 Sclerostin domain containing 1 SOSTDC1 -3.365 -10.30 down PTC Norm 16 16 publication 15735049 25 34 1698 26018 LRIG1 leucine-rich repeats and immunoglobulin-like domains 1 affy_probe_2_Entrez 1 1 55 -3.12 down 1 0 0/1 -3.12 1 55 -3.12 -3.12 211596_s_at 211596_s_at leucine-rich repeats and immunoglobulin-like domains 1 /// leucine-rich repeats and immunoglobulin-like domains 1 LRIG1 -3.116 -3.12 down 0.005129109 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1771 26034 PIP3-E phosphoinositide-binding protein PIP3-E affy_probe_2_Entrez 2 2 90 -11.03 down 2 0 0/2 -5.515 2 90 -2.50 -8.53 214735_at 214735_at phosphoinositide-binding protein PIP3-E PIP3-E -8.534 -8.53 down 3.72471E-13 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 7 12 497 26034 PIP3-E phosphoinositide-binding protein PIP3-E clone_accession_2_NCBI_rna_accession_2_Entrez 2 2 90 -11.03 down 2 0 0/2 -5.515 2 90 -2.50 -8.53 AB007863 AB007863 KIAA0403 mRNA KIAA0403 2.5 -2.50 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1693 26040 SETBP1 SET binding protein 1 affy_probe_2_Entrez 1 1 55 -2.97 down 1 0 0/1 -2.97 1 55 -2.97 -2.97 205933_at 205933_at SET binding protein 1 SETBP1 -2.973 -2.97 down 0.007628938 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1611 26503 SLC17A5 solute carrier family 17 (anion/sugar transporter), member 5 affy_probe_2_Entrez 1 1 55 2.58 up 1 0 1/0 2.58 1 55 2.58 2.58 221041_s_at 221041_s_at solute carrier family 17 (anion/sugar transporter), member 5 SLC17A5 2.582 2.58 up 0.028162674 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 14 21 977 26578 OSTF1 osteoclast stimulating factor 1 clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 2.9 up 1 0 1/0 2.9 1 14 2.90 2.90 AA283693 AA283693 Osteoclast-stimulating factor 2.9 2.90 up PTC Norm 7 7 publication 15041723 7 12 535 27124 PIB5PA phosphatidylinositol (4,5) bisphosphate 5-phosphatase, A clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 35 -2.1 down 1 0 0/1 -2.1 1 35 -2.10 -2.10 U45975 U45975 Phosphatidylinositol 4,5-bisphosphate 5-phosphatase homolog PIPP 2.1 -2.10 down PTC;FVPTC FA;HN 14 21 publication 15240595 25 34 1576 27161 EIF2C2 eukaryotic translation initiation factor 2C, 2 affy_probe_2_Entrez 1 1 55 5.24 up 1 0 1/0 5.24 1 55 5.24 5.24 222294_s_at 222294_s_at --- --- 5.237 5.24 up 7.86214E-06 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1460 28965 SLC27A6 solute carrier family 27 (fatty acid transporter), member 6 Gene_symbol_2_NCBI_Entrez 1 1 32 10.97 up 1 0 1/0 10.97 1 32 10.97 10.97 Solute carrier family 27 ( fatty acid transporter), member 6 SLC27A6 3.455 10.97 up PTC Norm 16 16 publication 15735049 25 34 1685 29118 DDX25 DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 affy_probe_2_Entrez 1 1 55 -2.87 down 1 0 0/1 -2.87 1 55 -2.87 -2.87 219945_at 219945_at DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 DDX25 -2.868 -2.87 down 0.005312359 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1648 29842 TFCP2L1 transcription factor CP2-like 1 affy_probe_2_Entrez 1 1 55 -2.17 down 1 0 0/1 -2.17 1 55 -2.17 -2.17 219735_s_at 219735_s_at transcription factor CP2-like 1 TFCP2L1 -2.172 -2.17 down 4.2665E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 4 8 322 50486 G0S2 putative lymphocyte G0/G1 switch gene affy_probe_2_Entrez 1 1 28 0 up 1 0 1/0 0 0 0 0 0 38326_at 38326_at putative lymphocyte G0/G1 switch gene_G0S2 G0S2 up PTC FTC;Norm 6 22 provided by authors 15337802 2 4 103 50488 MINK1 misshapen-like kinase 1 (zebrafish) clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 2 -5.6 down 1 0 0/1 -5.6 1 2 -5.60 -5.60 NM_015716 NM_015716 Misshapen/NIK-related kinase MINK 5.6 -5.60 down PCL Norm 1 1 publication 15785240 25 34 1660 51011 FAHD2A fumarylacetoacetate hydrolase domain containing 2A affy_probe_2_Entrez 1 1 55 -2.49 down 1 0 0/1 -2.49 1 55 -2.49 -2.49 222056_s_at 222056_s_at fumarylacetoacetate hydrolase domain containing 2A FAHD2A -2.421 -2.42 down 0.000948018 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1664 51011 FAHD2A fumarylacetoacetate hydrolase domain containing 2A affy_probe_2_Entrez 1 1 55 -2.49 down 1 0 0/1 -2.49 1 55 -2.49 -2.49 218504_at 218504_at fumarylacetoacetate hydrolase domain containing 2A FAHD2A -2.486 -2.49 down 0.006361772 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 16 24 1226 51340 CRNKL1 Crn, crooked neck-like 1 (Drosophila) Gene_symbol_2_NCBI_Entrez 1 1 63 -1.68 down 1 0 0/1 -1.68 1 63 -1.68 -1.68 CRNKL1 0.593984962 -1.68 down 0.01 PTC;FVPTC FA;HN 32 31 publication 15087409 16 24 1231 51382 ATP6V1D ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D Gene_symbol_2_NCBI_Entrez 1 1 63 -1.82 down 1 0 0/1 -1.82 1 63 -1.82 -1.82 ATP6V1D 0.549707602 -1.82 down 0.01 PTC;FVPTC FA;HN 32 31 publication 15087409 16 24 1233 51690 LSM7 LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) Gene_symbol_2_NCBI_Entrez 1 1 63 -1.86 down 1 0 0/1 -1.86 1 63 -1.86 -1.86 LSM7 0.5390625 -1.86 down yes 0.001 PTC;FVPTC FA;HN 32 31 publication 15087409 24 33 1537 51741 WWOX WW domain containing oxidoreductase Gene_symbol_2_NCBI_Entrez 2 2 87 -6.34 down 2 0 0/2 -3.17 2 87 -2.85 -3.49 WW domain containing oxidoreductase WWOX -1.51 -2.85 down PTC Norm 16 16 publication 15735049 25 34 1713 51741 WWOX WW domain containing oxidoreductase affy_probe_2_Entrez 2 2 87 -6.34 down 2 0 0/2 -3.17 2 87 -2.85 -3.49 219077_s_at 219077_s_at WW domain containing oxidoreductase WWOX -3.486 -3.49 down 0.045866957 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1571 51809 GALNT7 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) affy_probe_2_Entrez 1 1 55 5.76 up 1 0 1/0 5.76 1 55 5.76 5.76 218313_s_at 218313_s_at UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) GALNT7 5.760 5.76 up 4.17933E-06 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1720 53353 LRP1B low density lipoprotein-related protein 1B (deleted in tumors) affy_probe_2_Entrez 1 1 55 -3.69 down 1 0 0/1 -3.69 1 55 -3.69 -3.69 219643_at 219643_at low density lipoprotein-related protein 1B (deleted in tumors) LRP1B -3.690 -3.69 down 3.55901E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 16 24 1219 54065 C21orf51 chromosome 21 open reading frame 51 Gene_symbol_2_NCBI_Entrez 1 1 63 -1.6 down 1 0 0/1 -1.6 1 63 -1.60 -1.60 C21orf51 0.623762376 -1.60 down 0.02 PTC;FVPTC FA;HN 32 31 publication 15087409 24 33 1481 54210 TREM1 triggering receptor expressed on myeloid cells 1 Gene_symbol_2_NCBI_Entrez 1 1 32 4.63 up 1 0 1/0 4.63 1 32 4.63 4.63 Triggering receptor expressed on myeloid cells 1 TREM1 2.21 4.63 up PTC Norm 16 16 publication 15735049 16 24 1240 54462 KIAA1128 KIAA1128 Gene_symbol_2_NCBI_Entrez 1 1 63 -1.96 down 1 0 0/1 -1.96 1 63 -1.96 -1.96 KIAA1128 0.511363636 -1.96 down yes 0.03 PTC;FVPTC FA;HN 32 31 publication 15087409 25 34 1654 54556 ING3 inhibitor of growth family, member 3 affy_probe_2_Entrez 1 1 55 -2.24 down 1 0 0/1 -2.24 1 55 -2.24 -2.24 205070_at 205070_at inhibitor of growth family, member 3 ING3 -2.239 -2.24 down 0.000425855 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1667 54959 APIN APin protein affy_probe_2_Entrez 1 1 55 -2.54 down 1 0 0/1 -2.54 1 55 -2.54 -2.54 220133_at 220133_at APin protein APIN -2.541 -2.54 down 2.50295E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 16 24 1230 54969 FLJ20534 hypothetical protein FLJ20534 Gene_symbol_2_NCBI_Entrez 1 1 63 -1.8 down 1 0 0/1 -1.8 1 63 -1.80 -1.80 FLJ20534 0.556701031 -1.80 down 0.02 PTC;FVPTC FA;HN 32 31 publication 15087409 25 34 1699 54996 MOSC2 MOCO sulphurase C-terminal domain containing 2 affy_probe_2_Entrez 1 1 55 -3.14 down 1 0 0/1 -3.14 1 55 -3.14 -3.14 221636_s_at 221636_s_at hypothetical protein FLJ20605 FLJ20605 -3.143 -3.14 down 6.37944E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1707 55022 FLJ20701 hypothetical protein FLJ20701 affy_probe_2_Entrez 1 1 55 -3.31 down 1 0 0/1 -3.31 1 55 -3.31 -3.31 219093_at 219093_at hypothetical protein FLJ20701 FLJ20701 -3.314 -3.31 down 5.24947E-09 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1543 55086 FLJ10178 hypothetical protein FLJ10178 Gene_symbol_2_NCBI_Entrez 1 1 32 -8.17 down 1 0 0/1 -8.17 1 32 -8.17 -8.17 Hypothetical protein FLJ10178 FLJ10178 -3.03 -8.17 down PTC Norm 16 16 publication 15735049 24 33 1480 55220 FLJ10748 hypothetical protein FLJ10748 Gene_symbol_2_NCBI_Entrez 1 1 32 4.68 up 1 0 1/0 4.68 1 32 4.68 4.68 Hypothetical protein FLJ10748 FLJ10748 2.225 4.68 up PTC Norm 16 16 publication 15735049 24 33 1525 55274 PHF10 PHD finger protein 10 Gene_symbol_2_NCBI_Entrez 1 1 32 -1.59 down 1 0 0/1 -1.59 1 32 -1.59 -1.59 PHD finger protein 10 PHF10 -0.665 -1.59 down PTC Norm 16 16 publication 15735049 16 24 1213 55364 IMPACT hypothetical protein IMPACT Gene_symbol_2_NCBI_Entrez 1 1 63 -1.53 down 1 0 0/1 -1.53 1 63 -1.53 -1.53 IMPACT 0.651515152 -1.53 down yes 0.03 PTC;FVPTC FA;HN 32 31 publication 15087409 16 24 1212 55650 PIGV phosphatidylinositol glycan, class V Gene_symbol_2_NCBI_Synonym_2_Entrez 1 1 63 -1.53 down 1 0 0/1 -1.53 1 63 -1.53 -1.53 FLJ20477 0.655172414 -1.53 down 0.0001 PTC;FVPTC FA;HN 32 31 publication 15087409 25 34 1761 55753 OGDHL oxoglutarate dehydrogenase-like affy_probe_2_Entrez 1 1 55 -6.78 down 1 0 0/1 -6.78 1 55 -6.78 -6.78 219277_s_at 219277_s_at oxoglutarate dehydrogenase-like OGDHL -6.778 -6.78 down 0.026741097 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1609 55784 MCTP2 multiple C2-domains with two transmembrane regions 2 affy_probe_2_Entrez 1 1 55 2.69 up 1 0 1/0 2.69 1 55 2.69 2.69 220603_s_at 220603_s_at multiple C2-domains with two transmembrane regions 2 MCTP2 2.691 2.69 up 3.06294E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1750 55790 ChGn chondroitin beta1,4 N-acetylgalactosaminyltransferase affy_probe_2_Entrez 1 1 55 -5.62 down 1 0 0/1 -5.62 1 55 -5.62 -5.62 219049_at 219049_at chondroitin beta1,4 N-acetylgalactosaminyltransferase ChGn -5.620 -5.62 down 0.002724696 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 16 24 1234 55830 GLT8D1 glycosyltransferase 8 domain containing 1 Gene_symbol_2_NCBI_Synonym_2_Entrez 1 1 63 -1.87 down 1 0 0/1 -1.87 1 63 -1.87 -1.87 AD-017 0.535031847 -1.87 down 0.01 PTC;FVPTC FA;HN 32 31 publication 15087409 25 34 1671 56603 CYP26B1 cytochrome P450, family 26, subfamily B, polypeptide 1 affy_probe_2_Entrez 1 1 55 -2.61 down 1 0 0/1 -2.61 1 55 -2.61 -2.61 219825_at 219825_at cytochrome P450, family 26, subfamily B, polypeptide 1 CYP26B1 -2.609 -2.61 down 0.020528648 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1448 56649 TMPRSS4 transmembrane protease, serine 4 Gene_symbol_2_NCBI_Entrez 1 1 32 19.77 up 1 0 1/0 19.77 1 32 19.77 19.77 Transmembrane protease, serine 4 TMPRSS4 4.305 19.77 up PTC Norm 16 16 publication 15735049 16 24 1209 56943 ENY2 enhancer of yellow 2 homolog (Drosophila) Gene_symbol_2_NCBI_Synonym_2_Entrez 1 1 63 -1.47 down 1 0 0/1 -1.47 1 63 -1.47 -1.47 DC6 0.680672269 -1.47 down 0.04 PTC;FVPTC FA;HN 32 31 publication 15087409 25 34 1715 57088 PLSCR4 phospholipid scramblase 4 affy_probe_2_Entrez 1 1 55 -3.55 down 1 0 0/1 -3.55 1 55 -3.55 -3.55 218901_at 218901_at --- --- -3.555 -3.55 down 0.001250845 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1501 57402 S100A14 S100 calcium binding protein A14 Gene_symbol_2_NCBI_Entrez 1 1 32 2.32 up 1 0 1/0 2.32 1 32 2.32 2.32 S100 calcium-binding protein A14 (calgizzarin) S100A14 1.215 2.32 up PTC Norm 16 16 publication 15735049 19 32 1417 57561 ARRDC3 arrestin domain containing 3 tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 up 1 0 1/0 0 0 0 0 0 AAGCAAGAAT AAGCAAGAAT KIAA1376 protein up 0.0245 FVPTC Norm 1 1 publication 14715705 25 34 1647 57613 KIAA1467 KIAA1467 protein affy_probe_2_Entrez 1 1 55 -2.16 down 1 0 0/1 -2.16 1 55 -2.16 -2.16 213234_at 213234_at KIAA1467 protein KIAA1467 -2.158 -2.16 down 0.038062468 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 16 24 1214 58497 PRUNE prune homolog (Drosophila) Gene_symbol_2_NCBI_Synonym_2_Entrez 2 2 95 -3.4 down 2 0 0/2 -1.7 2 95 -1.56 -1.84 HTCD37 0.639344262 -1.56 down 0.01 PTC;FVPTC FA;HN 32 31 publication 15087409 24 33 1528 58497 PRUNE prune homolog (Drosophila) Gene_symbol_2_NCBI_Synonym_2_Entrez 2 2 95 -3.4 down 2 0 0/2 -1.7 2 95 -1.56 -1.84 TcD37 homologue HTCD37 -0.88 -1.84 down PTC Norm 16 16 publication 15735049 24 33 1502 64220 STRA6 stimulated by retinoic acid gene 6 homolog (mouse) Gene_symbol_2_NCBI_Synonym_2_Entrez 1 1 32 2.31 up 1 0 1/0 2.31 1 32 2.31 2.31 Stimulated by retinoic acid gene 6 FLJ12541 1.21 2.31 up PTC Norm 16 16 publication 15735049 25 34 1674 64283 RGNEF Rho-guanine nucleotide exchange factor affy_probe_2_Entrez 1 1 55 -2.63 down 1 0 0/1 -2.63 1 55 -2.63 -2.63 219610_at 219610_at Rho-guanine nucleotide exchange factor RGNEF -2.634 -2.63 down 0.000282681 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1595 64393 WIG1 p53 target zinc finger protein affy_probe_2_Entrez 1 1 55 3.33 up 1 0 1/0 3.33 1 55 3.33 3.33 219628_at 219628_at p53 target zinc finger protein WIG1 3.326 3.33 up 0.034418855 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1711 64759 TNS3 tensin 3 affy_probe_2_Entrez 1 1 55 -3.46 down 1 0 0/1 -3.46 1 55 -3.46 -3.46 217853_at 217853_at tensin-like SH2 domain containing 1 TENS1 -3.458 -3.46 down 0.029759472 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1463 64838 FNDC4 fibronectin type III domain containing 4 Gene_symbol_2_NCBI_Synonym_2_Entrez 1 1 32 8.43 up 1 0 1/0 8.43 1 32 8.43 8.43 Likely orthologue of mouse fibronectin type III repeat containing protein 1 FRCP1 3.075 8.43 up PTC Norm 16 16 publication 15735049 4 8 369 79017 C7orf24 chromosome 7 open reading frame 24 affy_probe_2_Entrez 1 1 28 0 up 1 0 1/0 0 0 0 0 0 41696_at 41696_at chromosome 7 open reading frame 24_C7orf24 C7orf24 up PTC FTC;Norm 6 22 provided by authors 15337802 25 34 1755 79698 ZMAT4 zinc finger, matrin type 4 affy_probe_2_Entrez 1 1 55 -6.19 down 1 0 0/1 -6.19 1 55 -6.19 -6.19 219877_at 219877_at hypothetical protein FLJ13842 FLJ13842 -6.189 -6.19 down 0.000543866 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1614 79745 RSNL2 restin-like 2 affy_probe_2_Entrez 1 1 55 2.51 up 1 0 1/0 2.51 1 55 2.51 2.51 219944_at 219944_at hypothetical protein FLJ21069 FLJ21069 2.511 2.51 up 0.015516611 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1706 79953 C20orf39 chromosome 20 open reading frame 39 affy_probe_2_Entrez 1 1 55 -3.3 down 1 0 0/1 -3.3 1 55 -3.30 -3.30 219310_at 219310_at chromosome 20 open reading frame 39 C20orf39 -3.304 -3.30 down 1.67171E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1541 80157 FLJ21511 hypothetical protein FLJ21511 Gene_symbol_2_NCBI_Entrez 2 2 87 -11.76 down 2 0 0/2 -5.88 2 87 -4.64 -7.12 Hypothetical protein FLJ21511 FLJ21511 -2.215 -4.64 down PTC Norm 16 16 publication 15735049 25 34 1759 80157 FLJ21511 hypothetical protein FLJ21511 affy_probe_2_Entrez 2 2 87 -11.76 down 2 0 0/2 -5.88 2 87 -4.64 -7.12 220723_s_at 220723_s_at hypothetical protein FLJ21511 FLJ21511 -6.593 -6.59 down 0.000104549 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1766 80157 FLJ21511 hypothetical protein FLJ21511 affy_probe_2_Entrez 2 2 87 -11.76 down 2 0 0/2 -5.88 2 87 -4.64 -7.12 220724_at 220724_at hypothetical protein FLJ21511 FLJ21511 -7.115 -7.12 down 0.000193981 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1604 81569 ACTL8 actin-like 8 affy_probe_2_Entrez 1 1 55 2.87 up 1 0 1/0 2.87 1 55 2.87 2.87 214957_at 214957_at actin like protein LOC81569 2.867 2.87 up 0.017874849 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 16 24 1236 81689 HBLD2 HESB like domain containing 2 Gene_symbol_2_NCBI_Synonym_2_Entrez 1 1 63 -1.89 down 1 0 0/1 -1.89 1 63 -1.89 -1.89 MGC4276 0.529411765 -1.89 down 0.0001 PTC;FVPTC FA;HN 32 31 publication 15087409 25 34 1646 81839 VANGL1 vang-like 1 (van gogh, Drosophila) affy_probe_2_Entrez 1 1 55 -2.13 down 1 0 0/1 -2.13 1 55 -2.13 -2.13 219330_at 219330_at vang-like 1 (van gogh, Drosophila) VANGL1 -2.130 -2.13 down 0.000634148 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1689 83439 TCF7L1 transcription factor 7-like 1 (T-cell specific, HMG-box) affy_probe_2_Entrez 1 1 55 -2.93 down 1 0 0/1 -2.93 1 55 -2.93 -2.93 221016_s_at 221016_s_at transcription factor 7-like 1 (T-cell specific, HMG-box) /// transcription factor 7-like 1 (T-cell specific, HMG-box) TCF7L1 -2.931 -2.93 down 0.002847923 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1756 83468 GLT8D2 glycosyltransferase 8 domain containing 2 affy_probe_2_Entrez 1 1 55 -6.23 down 1 0 0/1 -6.23 1 55 -6.23 -6.23 221447_s_at 221447_s_at gycosyltransferase /// gycosyltransferase LOC83468 -6.227 -6.23 down 2.16432E-07 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1696 83478 ARHGAP24 Rho GTPase activating protein 24 affy_probe_2_Entrez 1 1 55 -3.08 down 1 0 0/1 -3.08 1 55 -3.08 -3.08 221030_s_at 221030_s_at Rho GTPase activating protein 24 /// Rho GTPase activating protein 24 ARHGAP24 -3.085 -3.08 down 0.000138869 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1644 84187 RP13-360B22.2 hypothetical protein FLJ22679 affy_probe_2_Entrez 1 1 55 -2.11 down 1 0 0/1 -2.11 1 55 -2.11 -2.11 220486_x_at 220486_x_at hypothetical protein FLJ22679 FLJ22679 -2.114 -2.11 down 0.025028009 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 19 32 1408 84525 HOP homeodomain-only protein tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 up 1 0 1/0 0 0 0 0 0 ATGACAGATG ATGACAGATG SMAP31/homeodomain only protein (HOP) up 0.0001 FVPTC Norm 1 1 publication 14715705 24 33 1532 84864 MINA MYC induced nuclear antigen Gene_symbol_2_NCBI_Synonym_2_Entrez 1 1 32 -2.23 down 1 0 0/1 -2.23 1 32 -2.23 -2.23 Myc-induced nuclear antigen, 53 kDa MINA53 -1.16 -2.23 down PTC Norm 16 16 publication 15735049 17 28 1281 84992 MGC14156 hypothetical protein MGC14156 tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 down 1 0 0/1 0 0 0 0 0 TTGACACTTT TTGACACTTT down PTC ATC 1 1 publication 11076659 25 34 1712 90627 STARD13 START domain containing 13 affy_probe_2_Entrez 1 1 55 -3.46 down 1 0 0/1 -3.46 1 55 -3.46 -3.46 213103_at 213103_at START domain containing 13 STARD13 -3.463 -3.46 down 3.5504E-06 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 19 32 1437 91746 YT521 splicing factor YT521-B tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 up 1 0 1/0 0 0 0 0 0 TAGTTGCACA TAGTTGCACA NoMatch B59 up 0.0245 FVPTC Norm 1 1 publication 14715705 25 34 1758 91851 CHRDL1 chordin-like 1 affy_probe_2_Entrez 1 1 55 -6.52 down 1 0 0/1 -6.52 1 55 -6.52 -6.52 209763_at 209763_at chordin-like 1 CHRDL1 -6.519 -6.52 down 0.001912108 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1534 92104 FLJ13946 hypothetical protein FLJ13946 Gene_symbol_2_NCBI_Entrez 1 1 32 -2.45 down 1 0 0/1 -2.45 1 32 -2.45 -2.45 Hypothetical protein FLJ13946 FLJ13946 -1.295 -2.45 down PTC Norm 16 16 publication 15735049 19 32 1440 94239 H2AFV H2A histone family, member V tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 down 1 0 0/1 0 0 0 0 0 TGGTGAAAAA TGGTGAAAAA NoMatch B44 down 0.0006 FVPTC Norm 1 1 publication 14715705 25 34 1677 114876 OSBPL1A oxysterol binding protein-like 1A affy_probe_2_Entrez 1 1 55 -2.73 down 1 0 0/1 -2.73 1 55 -2.73 -2.73 209485_s_at 209485_s_at oxysterol binding protein-like 1A OSBPL1A -2.726 -2.73 down 0.000496751 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 19 32 1418 114926 C8orf40 chromosome 8 open reading frame 40 tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 up 1 0 1/0 0 0 0 0 0 AACAGCTTTA AACAGCTTTA hypothetical protein BC013035 up 0.0245 FVPTC Norm 1 1 publication 14715705 19 32 1429 121053 MGC40397 hypothetical protein MGC40397 tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 down 1 0 0/1 0 0 0 0 0 GCAAGCCCCA GCAAGCCCCA hypothetical protein MGC40397 down 0.0186 FVPTC Norm 1 1 publication 14715705 19 32 1428 146556 MGC45438 hypothetical protein MGC45438 tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 down 1 0 0/1 0 0 0 0 0 CCAGCTGCCT CCAGCTGCCT hypothetical protein MGC45438 down 0.0186 FVPTC Norm 1 1 publication 14715705 25 34 1726 166647 GPR125 G protein-coupled receptor 125 affy_probe_2_Entrez 1 1 55 -3.91 down 1 0 0/1 -3.91 1 55 -3.91 -3.91 210473_s_at 210473_s_at G protein-coupled receptor 125 GPR125 -3.908 -3.91 down 1.21446E-05 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 19 32 1411 197370 NSMCE1 non-SMC element 1 homolog (S. cerevisiae) tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 up 1 0 1/0 0 0 0 0 0 ACCGCAGTGC ACCGCAGTGC insulin-like growth factor binding protein 4 up 0.0245 FVPTC Norm 1 1 publication 14715705 25 34 1695 223117 SEMA3D sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D affy_probe_2_Entrez 1 1 55 -3.06 down 1 0 0/1 -3.06 1 55 -3.06 -3.06 215643_at 215643_at sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D SEMA3D -3.057 -3.06 down 2.98547E-07 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 25 34 1662 284244 LOC284244 hypothetical protein LOC284244 affy_probe_2_Entrez 1 1 55 -2.47 down 1 0 0/1 -2.47 1 55 -2.47 -2.47 214162_at 214162_at hypothetical protein LOC284244 LOC284244 -2.469 -2.47 down 0.013913616 PTC Norm 51 4 suppl. Materials Performed calculation of differential expression between PTC and Normal myself in excel. Included all 2fold changes with bonferonni corrected pvalue > 0.5 16007166 24 33 1526 375056 UNQ6077 AAAP6077 Gene_symbol_2_NCBI_Synonym_2_Entrez 1 1 32 -1.68 down 1 0 0/1 -1.68 1 32 -1.68 -1.68 C219-reactive peptide FLJ39207 -0.75 -1.68 down PTC Norm 16 16 publication 15735049 10 16 725 399563 FLJ43806 hypothetical protein FLJ43806 affy_probe_2_Entrez 1 1 14 -2.56 down 1 0 0/1 -2.56 1 14 -2.56 -2.56 37151_at 37151_at Clone 23836 mRNA sequence 20 -2.56 -2.56 down no PTC GT 8 6 publication 15515157 10 16 720 439957 LOC439957 similar to Ig kappa chain V region (Z4) - human affy_probe_2_Entrez 1 1 14 -2.23 down 1 0 0/1 -2.23 1 14 -2.23 -2.23 31386_at 31386_at Human kappa immunoglobulin IGK -2.23 -2.23 down yes PTC GT 8 6 publication 15515157 19 32 1405 440270 LOC440270 golgin-67 tag_2_refseq_or_mgc_2_Entrez 1 1 2 0 up 1 0 1/0 0 0 0 0 0 ATCCTTTTAT ATCCTTTTAT golgin-67 up 0.0001 FVPTC Norm 1 1 publication 14715705 14 21 980 442472 LOC442472 similar to H2A-Bbd clone_accession_2_NCBI_rna_accession_2_Entrez 1 1 14 2.8 up 1 0 1/0 2.8 1 14 2.80 2.80 AA703660 AA703660 H2A histone family 2.8 2.80 up PTC Norm 7 7 publication 15041723