Basic Statistics
Measure | Value |
---|---|
Filename | NA12878_S1_L001_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 388038711 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCGGAAGAGCACACGTCTGAACTCCAGTCACACTGATATATCTCGTATG | 618190 | 0.15931142498821466 | TruSeq Adapter, Index 25 (97% over 43bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATCGGAA | 261230 | 0.0 | 43.22917 | 1 |
TCGGAAG | 268210 | 0.0 | 42.066628 | 2 |
CGGAAGA | 281690 | 0.0 | 40.017498 | 3 |
AGAGCAC | 492310 | 0.0 | 23.266407 | 7 |
AGCACAC | 514805 | 0.0 | 22.316072 | 9 |
GAGCACA | 527840 | 0.0 | 21.781458 | 8 |
GAAGAGC | 545035 | 0.0 | 21.163319 | 5 |
TATGCCG | 119725 | 0.0 | 19.412434 | 45-49 |
CGTATGC | 131840 | 0.0 | 17.530718 | 45-49 |
CTCGTAT | 121310 | 0.0 | 16.798895 | 40-44 |
TCTCGTA | 125540 | 0.0 | 16.148554 | 40-44 |
ATGCCGT | 144520 | 0.0 | 16.111979 | 45-49 |
GCCGTCT | 145720 | 0.0 | 15.810965 | 50-54 |
TGCCGTC | 142795 | 0.0 | 15.729895 | 45-49 |
AAGAGCA | 764485 | 0.0 | 15.322475 | 6 |
TATCTCG | 131795 | 0.0 | 15.313934 | 40-44 |
TCGTATG | 133095 | 0.0 | 14.81684 | 40-44 |
ATCTCGT | 145505 | 0.0 | 14.070298 | 40-44 |
GGAAGAG | 851720 | 0.0 | 13.87986 | 4 |
CGTCTTC | 169130 | 0.0 | 13.855674 | 50-54 |