All statistics are based on contigs of size >= 3000 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs). Assembly NA12878.wt ntk40i5d5m1_edited ntk50i5d5m1_edited ntk50k45i5d5m1_edited ntk50k45k40i5d5m1_edited ntk50k45k40k35i5d5m1_edited ntk50k45k40k35k30i5d5m1_edited (NA12878.wt-ntedit) # contigs (>= 0 bp) 4219 4219 4219 4219 4219 4219 4219 # contigs (>= 1000 bp) 4219 4219 4219 4219 4219 4219 4219 # contigs (>= 5000 bp) 3952 3957 3957 3957 3957 3958 3960 # contigs (>= 10000 bp) 2751 2756 2755 2756 2757 2758 2760 # contigs (>= 25000 bp) 1477 1481 1481 1481 1481 1481 1481 # contigs (>= 50000 bp) 934 938 938 938 938 939 939 Total length (>= 0 bp) 2701125720 2722330687 2720526420 2722929123 2723614673 2726280525 2727159231 Total length (>= 1000 bp) 2701125720 2722330687 2720526420 2722929123 2723614673 2726280525 2727159231 Total length (>= 5000 bp) 2699960455 2721188980 2719385263 2721787510 2722472684 2725142389 2726029160 Total length (>= 10000 bp) 2691294520 2712519307 2710711507 2713117751 2713809576 2716473580 2717359794 Total length (>= 25000 bp) 2671071418 2692280007 2690495512 2692879128 2693553018 2696183400 2697025719 Total length (>= 50000 bp) 2651798770 2673029807 2671257645 2673627992 2674295112 2676954463 2677778463 # contigs 4208 4208 4208 4208 4208 4208 4208 Largest contig 81812050 82459356 82406276 82474337 82492605 82569977 82592179 Total length 2701096538 2722301489 2720497231 2722899930 2723585475 2726251304 2727129982 Reference length 3088269832 3088269832 3088269832 3088269832 3088269832 3088269832 3088269832 Reference GC (%) 40.87 40.87 40.87 40.87 40.87 40.87 40.87 N50 15243961 15360893 15352349 15363151 15365816 15234233 15237947 NG50 11842381 11978523 11970261 11980946 11984109 11996184 11999645 N75 5203233 5249979 5244313 5252329 5255573 5265143 5269411 NG75 2654112 2958563 2850291 2959137 2959740 2968941 2969730 L50 47 47 47 47 47 48 48 LG50 62 61 61 61 61 61 61 L75 121 121 121 121 121 121 121 LG75 196 189 190 189 189 188 188 # misassemblies 719 754 747 753 756 757 768 # misassembled contigs 368 381 376 381 383 385 390 Misassembled contigs length 1912377941 1921021455 1907656599 1918682595 1919447690 1922753209 1942801829 # local misassemblies 26376 24584 26190 24624 24039 22138 21547 # scaffold gap ext. mis. 0 0 0 0 0 0 0 # scaffold gap loc. mis. 0 0 0 0 0 0 0 # possible TEs 188 196 202 194 202 214 208 # unaligned mis. contigs 215 312 318 345 348 369 387 # unaligned contigs 2083 + 1611 part 1853 + 1762 part 1853 + 1782 part 1800 + 1820 part 1778 + 1830 part 1720 + 1866 part 1692 + 1888 part Unaligned length 127069608 98160892 101277346 97418338 96015116 91596695 90274710 Genome fraction (%) 88.714 89.709 89.596 89.730 89.780 89.937 89.988 Duplication ratio 0.988 0.996 0.995 0.996 0.996 0.997 0.997 # N's per 100 kbp 0.00 0.00 0.00 0.00 0.00 0.00 0.00 # mismatches per 100 kbp 684.84 684.68 685.75 666.80 659.29 636.69 632.86 # indels per 100 kbp 1044.10 378.54 430.92 365.11 350.65 281.34 267.24 Largest alignment 55119520 55976280 55891621 55980950 56019457 57430848 57474994 Total aligned length 2573540274 2623680989 2618777516 2624987161 2627085596 2634148701 2636357438 NA50 7794675 8162033 8154161 8165625 8168670 8182449 8240014 NGA50 5949322 6352667 6337015 6353212 6362165 6384419 6427997 NA75 3020568 3220687 3210514 3219906 3222652 3329778 3331421 NGA75 1340344 1534338 1527931 1548416 1555463 1605123 1605827 LA50 92 90 90 90 90 89 89 LGA50 121 116 116 116 116 114 113 LA75 229 222 222 222 222 219 219 LGA75 374 347 348 345 344 338 338