Iterative ntEdit polishing of NA12878 SMS wtdbg2 assembly (NA12878.wt.fa) using 54X Illumina
RLW23june2019


NA12878.wt-ntedit.fa.gz 
(ntk50k45k40k35k30i5d5m1_edited.fa)



ntHits/ntEdit parameters

runnthits.sh
runntedit.sh



BUSCO single copy gene analysis

BUSCOshort_summary_NA12878.wt.txt (original wtsbg2 preprint assembly)
BUSCOshort_summary_ntk50k45k40k35k30i5d5m1_edited.txt (iterative ntEdit run on the above)



QUAST analysis using GRCh38 (hg38)

quastReport.txt



ntEdit run time
*time