File Upload
- SVG upload
- TSV data upload
Contact and FAQ
- How do I start?
  - To begin using the pathway viewer tool. Upload your svg output file generated using our pathway visualization tool using the 'Choose File' button under the SVG file upload heading in main menu
    You can then explore your pathway by clicking on nodes and edges. Nodes will display more detailed sample information on click, and edges will preview their reference information
- Commonly Used Abbreviations
  - (FC) Fold change expression
  - (UE) Under-expression
  - (OE) Over-expression
  - (VUS) Variant of Unknown significance
  - (GoF) Gain-of-function variant
  - (LoF) Loss-of-function variant
- What are the links on the edges for?
  - Links that are associated with edges represent one of the sources that was used in creating the interaction that the edge represents
- Why are only some edges clickable?
  - Currently only preview of edges with a pubmed or pmc identifier is supported
- What is fold change?
  - Fold change is the normal/healthy tissue comparator. This is measured as the RNA expression level of the gene (in this patient) as compared to the RNA expression level expected in a 'normal' cell. The normal expression levels are calculated based on the illumina body map dataset
- What is the percentile?
  - This is the disease comparator. The percentile is a comparison of the RNA expression of a given gene (in the current patient) to the distribution of RNA expression of this gene within a given disease set.
- Who to Contact for further questions about this tool?
  - creisle@bcgsc.ca[Cara] or ezhao@bcgsc.ca[Eric]