Reference:

Montgomery S.B., Griffith O.L., Schuetz J.M., Brooks-Wilson, A., Jones S.J.M. "A Computational Discrimination Strategy For Regulatory Polymorphisms In The Upstream Non-Coding Regions of Homo Sapiens" (Submitted).

Scripts

This page describes the scripts folder that is part of the CHuM project

  • cisred/: Analysis of SNP data in cisRED

  • graphics/ (deprecated): Drawing SNP regions

  • neural/ (deprecated): pre-SVM work on neural network approach

  • results/ Results analysis (post pipeline step 10)

  • stacktovariantstack/ Re-formatting of stack files

  • publication/ Information on publications for rSNPs from ORegAnno

  • distance/ Distance to TSS based analysis utilities

  • coexpression/ Distance to TSS based analysis utilities

  • evidence/ ORegAnno evidence analysis utilities

  • visualbasic/ Visual Basic graphing scripts

  • analysis/ Analysis tests (for running individual properties)

  • R/ R data file generation

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(c) Stephen Montgomery, Creative Commons Attribution-NonCommercial, 2007